« Back to Setaria viridis search


Detailed information on CNT30670799


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192172Setaria viridisSecale cereale30.6723.2188.62123forward

Expression of CNT30670799

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGTLRLMPRMLALMAVQRQTAAARKRASLDGAIAISASYSFSSVL*

>peptide 2 (46 aa)
ILHGKSSPDPSPGHRSEENTYVHSDIDQHIDYNNIGAQDRSKAVVT*

Sequence

>CNT30670799
ATTTTACATGGCAAAAGCTCTCCCGATCCATCACCCGGACACCGAAGTGAAGAGAACACATACGTGCATTCAGATATAGACCAACACATAGACTATAATA
ACATAGGTGCACAAGATCGCAGCAAGGCAGTGGTTACTTAGAGGGGGCAGGTGAAGTCTGCGGGGCAGACCTTGCCACAGTGGTTGAGGAGGAGGCGCAG
GTCGATGGGCACGTTGAGGTTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGGCGAGAAAGAGGGCAAGCTTGGATGGCGCC
ATTGCTATCTCAGCTAGCTATAGCTTTTCAAGTGTGCTATGAGCTTCTCTAGCTATAGCTAGCTCTTGTGAGTAGTATTGGCTTGTGTGTGTGGGATGGT
T