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Detailed information on CNT30179476


BLAST search results

BLAST vs Swiss-Prot:
sp|P05698|RBL_HORVU, E-value = 2e-168

BLAST vs NONCODE:
NONMEST005601, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019929Secale cerealeCitrullus lanatus26.4956.2288.52244forward
CNT30237333Secale cerealeBrassica oleracea49.2929.4687454forward
CNT30360303Secale cerealeLactuca sativa34.4261.0890.85317forward
CNT30434475Secale cerealePapaver somniferum33.3379.9588.6307forward
CNT30121217Secale cerealeCitrus clementina88.0690.4187.18811forward

Expression of CNT30179476

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDKLHNRSIGCLPQQQARCDSIVLCNDQDW*

Sequence

>CNT30179476
ATGTACCCGCAGTCGCATTCAAGTAATGCCCCTTGATTTCACCGGTTTCGGCCTGTGATTTATAAATAGCTTCGGCACAAAAGACAAAACGGTCTCTCCA
GCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACACTCATAACACGCTCTACCATAATTTTTTGCGGAT
AATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGACGACCATACTTGTTCAACTTATCTCTTTCAACTTGGATACCATGAGGCGGGCCTTGGAAAG
TTTTTGAATAAGTAGGGGGAATTCGTAGATCCTCCAAACGTAGAGCACGTAGGGCTTTGAAACCAAATACGTTACCCACAATGGAAGTAAACATGTTAGT
AACGGAACCCTCTTCAAATAGGTCTAATGGATAAGCTACATAACAGATCCATTGGTTGTCTTCCCCAGCAACAGGCTCGATGTGATAGCATAGTCCTTTG
TAACGATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTGTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCAGCCCCTGCTTCTTCGGGCGGAACCC
CAGGCTGAGGACTTACTCGGAATGCTGCCAAGATATCAGTATCCTTAGTTTCATACTCTGGGGTGTAGTAAGTCAATTTATAATCTTTAACACCAGCTTG
AAATCCAACACCTGCTTTAGTTTCTGTTTGTGGTGACATAAGTCCCTCCCTATAACTCTTGAATTAAGAATTCTCACAATAACAGGGTCTACTCGATGTT
AATTAGGCGTAAATGAAACTTTAGCAAAAATCTCGTAAAACAAAAAGGATATTCAATTAATATAATATCAACTCATTAAAGAAAATTGAGGGCATGCTTA
GGTTAATGAATATGTTTCATT