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Detailed information on CNT3019929


BLAST search results

BLAST vs Swiss-Prot:
sp|P31180|RBL_BUXSE, E-value = 4e-36

BLAST vs NONCODE:
NONMEST005601, E-value = 2e-113

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Citrullus lanatusOryza sativa57.145.3790.32248forward
CNT30678148Citrullus lanatusSetaria viridis23.7315.6888.35103forward
CNT30536187Citrullus lanatusEucalyptus grandis35.4812.4887.01154forward
CNT30629265Citrullus lanatusVigna unguiculata56.9121.8293.93247forward
CNT30201084Citrullus lanatusPisum sativum57.3711.3491.16249forward
CNT30179476Citrullus lanatusSecale cereale56.2226.4988.52244forward
CNT30290805Citrullus lanatusTriticum aestivum56.2213.788.93244forward
CNT30225846Citrullus lanatusHordeum vulgare39.6315.1788.37172forward
CNT30565108Citrullus lanatusActinidia chinensis90.7848.0592.13394forward
CNT30539441Citrullus lanatusBrassica napus474.1796.08204forward
CNT30237533Citrullus lanatusBrassica oleracea90.5526.6886.77393forward
CNT30554212Citrullus lanatusOryza glaberrima57.146.5790.32248forward
CNT30146680Citrullus lanatusMedicago truncatula56.4519.5592.24245forward
CNT30435662Citrullus lanatusAegilops tauschii27.4237.388.24119forward
CNT30258658Citrullus lanatusAvena sativa53.2332.0491.34231forward
CNT3060115Citrullus lanatusArabidopsis lyrata90.5516.5887.02393forward
CNT30598584Citrullus lanatusFraxinus excelsior47.2439.0588.29205forward
CNT3017995Citrullus lanatusZea mays56.4515.8690.61245forward
CNT30217626Citrullus lanatusKalanchoe fedtschenkoi26.7318.185.34116forward
CNT30683050Citrullus lanatusTriticum urartu48.1615.3289.47209forward
CNT30356508Citrullus lanatusLactuca sativa79.2649.2193.02344forward
CNT30480921Citrullus lanatusChara braunii31.1117.7682.96135forward
CNT30434475Citrullus lanatusPapaver somniferum74.8884.6493.85325forward
CNT30323473Citrullus lanatusAsparagus officinalis30.8816.9888.81134forward
CNT30121217Citrullus lanatusCitrus clementina68.8933.3392.64299forward

Expression of CNT3019929

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LQRPLLPQVELPVEELLGMLPRYQYLWFHIQEYNKSIYNL*

>peptide 2 (35 aa)
MVFDSPNTVLLYTLSYVWRNPILFFQVCNLIFCLKI

>peptide 3 (55 aa)
YSGPCFLRWNSRLRSYSECCQDISIFGFIFRSIISQFIIFNTSFESNTCFSLCLW*

>peptide 4 (29 aa)
MKPFIGILSQNSQLILSTNQNGSLLDHGI*

Sequence

>CNT3019929
CTACAGCGGCCCCTGCTTCCTCAGGTGGAACTCCCGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCTTTGGTTTCATATTCAGGAGTATA
ATAAGTCAATTTATAATCTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAACTCATGAATTAA
GAATTCTCGCAACAACAAGGTCTACTCGACATGAATTAGGAGTTAATGAAACCTTTTATAGGAATCCTTTCACAAAATTCTCAACTAATATTATCAACTA
ATCAGAATGGTTCGTTATTAGACCATGGTATTTGATTCACCAAATACAGTATTATTGTATACTCTTTCATATGTATGGCGCAACCCAATCCTTTTTTTTC
AAGTTTGTAATCTAATCTTTTGCCTCAAAATATT