« Back to Brassica oleracea search


Detailed information on CNT30237333


BLAST search results

BLAST vs Swiss-Prot:
sp|P48686|RBL_BRAOL, E-value = 4e-154

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629265Brassica oleraceaVigna unguiculata27.2637.191.9420forward
CNT30179476Brassica oleraceaSecale cereale29.4649.2987454forward
CNT30539441Brassica oleraceaBrassica napus38.2912.0799.83590forward
CNT30258280Brassica oleraceaAvena sativa29.4691.988.77454forward

Expression of CNT30237333

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTNKSKTFHKKKFYSYIFDFKTRFWLVELENDYSFLH*

Sequence

>CNT30237333
TCATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAATAATGTCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATAGCTTCGGCACAAAATAA
GAAACGGTCTCTCCAACGCATAAATGGTTGAGAGTTCACATTCTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCA
TAGTTCTTCGCGGATAACCCCAACTTAGGTTTAATAGTACATCCTAATAGGGGACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAG
GGATTCGCAGATCCTCTAGACGTAGAGCAGCCAGGGCTTTGAACCCAAATACGTTACCCACAATTGAGGTAAACATGTTAGTAACAGACCCTTCTTCAAA
AAGGTCTAATGGGTAAGCTACATACGCAATAAATTGAGTTTCTTCTCCTGGAACGGGCTCGATGTGGTAGCATCGTCCTTTTTAACGGTCAAGGCTGGTA
AGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCAGCCCCTGCTTCTTCAGGTGGAACTCCGGGTTGAGGAGTTACTC
GGAATGCTGCCAAGATATCAGTATCCTTGGTTTCATATTCAGGAGTATAATAATTCAATTTATACTCTTTAACACCAGCTTTGAATCCAACACTTGCTTT
AGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAAGTCATGAATTTAGAATTCTTGCAATAAAACAAAACAACAAGGTCTACTCGACATAAATTAGGA
ATAGATTTAATTAACCTTTTTCACAGGAATCTTTCACAAAATTATCAACTAATCAGAATGATTCTTTATTAGACCATGATATTTGATTCGCCAAATACAT
CATTATTGTATATTCTTTCATATGTATAGCGCAACCTAATACTTGTTTTTCCAGTTTTGAATCTTTGACTTTTTATAAATCGAAATATTTAATATTAAAA
TAATAATAAAATCACTCTTGACAGTAATATATGTTTTATATGTAAATCCTAGATATGGCAATATGCGGAATTCATTCATGAAAATGAAAAACAAGGGGGT
GGTTGATATCGATGGGACACATAACCGGATATGCTAAAATGAAAATATGAAAAAAGGCTAATGAGATCGAAATAATGAATCATAAATAGAGTTCCGTTTC
GAATTGGCTAGATAAAACAAAGTCTTGACTATTATGACAAATAAATCAAAGACTTTCCACAAAAAAAAATTTTATTCATATATTTTTGATTTTAAAACTA
GGTTTTGGTTAGTTGAGCTTGAAAACGACTATTCCTTCCTTCATTGAAATTTAATAAGTAAAAATTTGAATTGCATATTCGCTTGGGTGGTACCAATGAA
ATCGAGTGCTTACTCCCATTTATTATTGAATTAACCAATGAATTTACTATCGAAGATTTTTTTCTGTATTCGAAAAATTTCGCAACAAAATTGAACATAT
TTTTATATTATGAGAATAAATCCTATTACTTCGGATCCAGC