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Detailed information on CNT30121217


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09MH0|RBL_CITSI, E-value = 2e-130

BLAST vs NONCODE:
NONMEST005601, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Citrus clementinaOryza sativa92.6417.9987.12831forward
CNT30678279Citrus clementinaSetaria viridis32.1133.5786.81288forward
CNT3019929Citrus clementinaCitrullus lanatus33.3368.8992.64299forward
CNT30629265Citrus clementinaVigna unguiculata53.0742.0589.71476forward
CNT30201084Citrus clementinaPisum sativum93.0938.0287.66835forward
CNT30179476Citrus clementinaSecale cereale90.4188.0687.18811forward
CNT30290805Citrus clementinaTriticum aestivum92.5346.686.87830forward
CNT30225846Citrus clementinaHordeum vulgare30.6624.2584.73275forward
CNT30565170Citrus clementinaActinidia chinensis98.7777.5891.65886forward
CNT3089355Citrus clementinaVigna radiata48.2772.6586.37433forward
CNT30539441Citrus clementinaBrassica napus92.4216.9689.99829forward
CNT30239038Citrus clementinaBrassica oleracea55.7440.190500forward
CNT30554212Citrus clementinaOryza glaberrima92.6422.0387.12831forward
CNT30146680Citrus clementinaMedicago truncatula38.0227.2188.56341forward
CNT30435662Citrus clementinaAegilops tauschii21.1859.5688.42190forward
CNT30258531Citrus clementinaAvena sativa64.7797.4888.47581forward
CNT3060115Citrus clementinaArabidopsis lyrata50.519.1191.39453forward
CNT3017995Citrus clementinaZea mays92.6453.7987.48831forward
CNT30683050Citrus clementinaTriticum urartu61.0940.1887.41548forward
CNT30477828Citrus clementinaArabidopsis halleri35.4562.4890.88318forward
CNT30355674Citrus clementinaLactuca sativa37.4645.5392.56336forward
CNT30434475Citrus clementinaPapaver somniferum37.0186.4690.96332forward
CNT30323704Citrus clementinaAsparagus officinalis32.6698.6588.4293forward
CNT30578317Citrus clementinaOryza barthii26.6449.3883.68239forward

Expression of CNT30121217

Peptides detected in this lncRNA

>peptide 1 (31 aa)
HFFACPCSSIQVMTFDFTCFSLSFIKSFRTK*

>peptide 2 (45 aa)
MEVNMLVTEPSSKGLTGKLHNIYIDSLLQQRAQCCSIALCNDQGW*

Sequence

>CNT30121217
GCATTTCTTCGCATGTCCCTGCAGTAGCATTCAAGTAATGACCTTTGATTTCACCTGTTTCAGCTTGAGCTTTATAAAGAGCTTCCGCACAAAATAAGAA
ACGGTCCCTCCAACGCATAAATGGTTGGGAGTTCACGTTCTCATCATCTTTGGTAAAGTCAAGTCCACCACGTAGACATTCATAAACCGCCCTACCATAA
TTCTTCGCGGATAACCCCAGTTTAGGTTTAATAGTACATCCCAACAGGGGACGGCCATACTTGTTCAATTTATCTCTCTCAACTTGGATGCCGTGAGGCG
GGCCTTGGAAAGTTTTAGTATACGCAGGAGGGATTCGTAGATCCTCTAGACGTAGAGCGCGCAGTGCTTTGAAACCAAATACATTACCCACAATGGAAGT
AAACATGTTAGTAACAGAACCTTCTTCAAAAGGTCTAACGGGTAAGCTACATAACATATATATTGATTCTCTTCTCCAGCAACGGGCTCAATGTTGTAGC
ATCGCCCTTTGTAACGATCAAGGCTGGTAAGCCCATCGGTCCACACAGCTGTCCAGGTACCAGTAGAAGATTCCGCAGCTACCGCAGCCCCCGCTTCCTC
GGGTGGAACTCCGGGCTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCTTTGGTTACATAGTCAGGAGTATAATAAGTCAATTTATAATCTTTA
ACACCGGCCTTGAATCCAACACTCGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAACTCATGAATTAAGAATTCTCGCAAGAACAAGGTC
TACTCGACATAAATTAGGAGTTAATGAAACCCCTTCACAGGAATCTTTCACAAGCTTTTCAATTAATATTATCACCTACTCAGAGCGTTTCCTTGTT