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Detailed information on CNT30360303


BLAST search results

BLAST vs Swiss-Prot:
sp|P31196|RBL_NEMMU, E-value = 4e-34

BLAST vs NONCODE:
NONORUT002429, E-value = 1e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678148Lactuca sativaSetaria viridis54.5343.0786.57283forward
CNT30179476Lactuca sativaSecale cereale61.0834.4290.85317forward
CNT30565108Lactuca sativaActinidia chinensis79.1950.1291.97411forward
CNT30435662Lactuca sativaAegilops tauschii36.4259.2591.53189forward
CNT30258658Lactuca sativaAvena sativa61.0843.9791.8317forward
CNT30598584Lactuca sativaFraxinus excelsior29.2928.9594.74152forward
CNT30480921Lactuca sativaChara braunii35.8424.4786.02186forward
CNT30323473Lactuca sativaAsparagus officinalis26.9717.7487.86140forward

Expression of CNT30360303

Peptides detected in this lncRNA

>peptide 1 (70 aa)
ISPVSACDLKIASAQNKKRSLQRINGWEFTFSSSLVKSRLVSPSVHTVVHVPVEDSAATAAPASSGGTPG*

Sequence

>CNT30360303
GATTTCACCTGTTTCAGCTTGTGATTTAAAAATAGCTTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATGGTTGGGAGTTCACGTTCTCATCA
TCTTTAGTAAAATCAAGGCTCGTAAGTCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCGGCCCCTGCTTCTTCAGGCG
GAACTCCAGGTTGAGGAGTTACTCGAAATGCTGCCAAAATATCAGTATCCTTGGTTTCATACTCAGGAGTATAATAAGTCAATTTATAATCTTTAACACC
AGCTTTTAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAATCCCTCCCTACAACTCATGAATTAAGAATTCTCACAACAACAAGGTCTACTC
GACATGAATTAGGCGTTAATGAAACTTTTTACAGGAACCTTTCACAAAATTCCCAACTAATAGTAAAATTATCAACTAATCAGAATGCTTGATTATTAGA
CCATGGTATTTGATTCGGC