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Detailed information on CNT30171214


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-65

BLAST vs NONCODE:
NONMTRT001605, E-value = 1e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373848Trifolium pratenseArabidopsis thaliana21.2121.3987.05224forward
CNT30380511Trifolium pratenseManihot esculenta23.7735.6585.26251forward
CNT30709036Trifolium pratenseGlycine max29.5548.683.65312forward
CNT30310534Trifolium pratenseCamelina sativa21.1218.8385.2223forward
CNT3079822Trifolium pratenseBrassica juncea21.7823.7484.78230forward
CNT30611387Trifolium pratenseArabis alpina18.5671.5386.73196forward

Expression of CNT30171214

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGRSSLRGRVGRQLLQEVRQQYGNPPQLPLG*

>peptide 2 (34 aa)
MVTLPMPRFGVEGESLIAFPTNDGEERAIVEEAI*

>peptide 3 (33 aa)
MMVKREPLLKKPFSILLATKLNKRIALLKMKRMV

>peptide 4 (46 aa)
MQHIFGVILAHFPGAKFVAKAQALLLTGSARWSARFSIGPFPVTIA*

>peptide 5 (44 aa)
KKNVVETDMLVEILEEPITIPLGFIRFDKGLIALHNHHIIIHIH*

Sequence

>CNT30171214
AAAAAAAATGTAGTTGAAACTGACATGCTAGTAGAGATTTTGGAAGAACCAATTACAATACCTTTGGGTTTCATTAGATTTGATAAAGGGCTTATAGCTT
TGCATAATCATCATATCATAATTCACATTCATTGAAGAAACACCTAAATGCACCAAATATTTAACTAAACTAAATTAACAATAAGAAATTCACACTCTGA
TATGCAACACATTTTTGGTGTAATTTTAGCTCACTTTCCGGGGGCAAAGTTTGTGGCGAAGGCCCAAGCATTGTTGTTAACTGGGTCAGCAAGGTGGTCA
GCAAGATTCTCTATAGGTCCTTTTCCGGTTACAATAGCTTGAACGAAGAAACCAAACATAGAGAACATAGCTAACCTACCATTCTTGAGTTCTTTCACCT
TTAACTCTGCAAAAGCCTCGGGGTCTTCAGCGAGGCCCAATGGGTCGAAGCTCCCTCCGGGGTAGAGTGGGTCGACAACTTCTCCAAGAGGTCCGCCAGC
AATACGGTAACCCTCCACAGCTCCCATTAGGATAACTTGGACAGCCCAGATAGCAAGGATACTTTGTGCGTGGACTAAGCTTGNNNNNNNNNNNNNNNNN
NNNNNNCGCCTCTCCAAATTTGACACCATTGCGGGACAAGAGCTCTGGGAAGACACATCCCAAGGCTCCCAACATAGCCCATCTACTGTGGATAACCTCA
AGTTCACGATTTTTGGCAAATGTCTCTGGGTCAGCAGAGAGTCCAGCAGTATCCCAACCATAGTCACCAGGAAACTCGCCAGTAAGGTAGGATGGAGCTT
CACCAGAGAATGGACCCAAGTACTTGACACGGTCTGGACCGTACCACGGGCTTCCAGAAGGAATCGTTTTCTTGGTGGTTGTTTTTCTCATGGTCACTCT
TCCCATGCCAAGGTTTGGTGTGGAGGGGGAAAGCTTGATTGCTTTCCCAACCAATGATGGTGAAGAGAGAGCCATTGTTGAAGAAGCCATTTAGTATTTT
ACTGGCAACTAAGTTAAACAAACGAATAGCTTTATTGAAAATGAAGAGGATGGTTA