Detailed information on CNT30611387


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ87|CB1B_ARATH, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373848Arabis alpinaArabidopsis thaliana71.5318.7290.31196forward
CNT30269346Arabis alpinaChenopodium quinoa70.824.986.6194forward
CNT30525387Arabis alpinaPhaseolus vulgaris70.840.3385.05194forward
CNT30200636Arabis alpinaPisum sativum60.9535.9985.63167forward
CNT3046620Arabis alpinaPrunus dulcis63.8728.4684175forward
CNT30542600Arabis alpinaBrassica napus71.5327.6494.9196forward
CNT30234848Arabis alpinaBrassica oleracea71.5330.4894.9196forward
CNT30171214Arabis alpinaTrifolium pratense71.5318.5686.73196forward
CNT30146159Arabis alpinaMedicago truncatula66.7929.3387.98183forward
CNT30313642Arabis alpinaCamelina sativa77.7438.8793.9213forward
CNT3079822Arabis alpinaBrassica juncea71.5320.2393.37196forward
CNT30263105Arabis alpinaBrassica rapa70.817.0292.27194forward
CNT30417231Arabis alpinaPapaver somniferum68.2525.1383.96187forward

Expression of CNT30611387

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVSKILNRSLTSDNSLNEESKHREHSQSSVLELLNLQLREGLW

Sequence

>CNT30611387
CTCCTCTTCCTCACTCTCACTCGAATTTAAAAACACTGAAACAAAAGCAAATTGTACATAGAAACAGATAAAAGTTTTGCTCACTTTCCGGGAACAAAGT
TGGTGGCGAAGGCCCAAGCGTTGTTGTTAACTGGATCAGCCAAATGGTCAGCAAGATTCTCAATAGGTCCCTTACCAGTGACAATAGCTTGAACGAAGAA
TCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGAGCTCCTTAACCTTCAACTCCGCGAAGGCCTCTGGGT