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Detailed information on CNT30380511


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 9e-108

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315824Manihot esculentaCorylus avellana48.5832.3687.13342forward
CNT30514140Manihot esculentaJuglans regia49.8635.184.62351forward
CNT30500907Manihot esculentaCoffea canephora69.7452.4683.91491forward
CNT30616124Manihot esculentaSesamum indicum50.4331.1189.3355forward
CNT30269346Manihot esculentaChenopodium quinoa5045.1984.94352forward
CNT30525395Manihot esculentaPhaseolus vulgaris55.1138.0882.99388forward
CNT30628736Manihot esculentaVigna unguiculata5047.5783.52352forward
CNT30504491Manihot esculentaNicotiana attenuata49.5736.8188.83349forward
CNT30709062Manihot esculentaGlycine max45.4539.784.69320forward
CNT3046617Manihot esculentaPrunus dulcis51.1452.483.06360forward
CNT30633669Manihot esculentaCapsicum annuum49.5744.6988.83349forward
CNT3099363Manihot esculentaSolanum tuberosum49.5733.488.54349forward
CNT30562274Manihot esculentaActinidia chinensis42.935.488.08302forward
CNT30508942Manihot esculentaSolanum lycopersicum49.1532.9287.57346forward
CNT30171214Manihot esculentaTrifolium pratense35.6523.7785.26251forward
CNT30146084Manihot esculentaMedicago truncatula50.1434.0184.14353forward
CNT30313626Manihot esculentaCamelina sativa49.2930.181.84347forward
CNT30598304Manihot esculentaFraxinus excelsior28.2763.9988.94199forward
CNT30609983Manihot esculentaGossypium raimondii63.6455.6584.38448forward
CNT30217700Manihot esculentaKalanchoe fedtschenkoi49.4344.1182.76348forward
CNT30202642Manihot esculentaHelianthus annuus30.8238.9685.25217forward
CNT30623083Manihot esculentaDaucus carota49.4333.4387.36348forward
CNT30621493Manihot esculentaCajanus cajan50.9926.7585.24359forward
CNT30354802Manihot esculentaLactuca sativa50.2841.1185.59354forward
CNT30153357Manihot esculentaPrunus persica49.0119.5483.48345forward
CNT30409978Manihot esculentaPapaver somniferum36.9327.2583.46260forward
CNT30705055Manihot esculentaPrunus avium51.1456.9683.61360forward
CNT30119285Manihot esculentaCitrus clementina53.8442.3986.28379forward
CNT30336168Manihot esculentaCynara cardunculus49.7234.5288.29350forward
CNT30725304Manihot esculentaLupinus angustifolius65.244.5683.44459forward

Expression of CNT30380511

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSGAEGVSFTALPAREGEERAIVEAAIV*

>peptide 2 (61 aa)
STTRLKNWIKKHLPSTQIYYIFCTTSPSHNFFPFALVGKTLKILQDFPFTFQGQSLWHKPR*

Sequence

>CNT30380511
TGAGCACAACAAGGTTAAAAAATTGGATTAAAAAACATTTACCATCCACTCAGATATATTACATTTTCTGCACCACCAGTCCATCTCATAATTTTTTCCC
CTTCGCTTTGGTAGGAAAAACACTCAAAATATTACAGGATTTTCCATTCACTTTCCAGGGACAAAGTTTGTGGCATAAGCCCAGATAGCCAAGATGCTTT
GTGCGTGGATCAAACTTGGATTCCCCAAGTAATCAAGACCACCCTCGCTAAAGATTTGCGCTCCTGCCTTGAACCACACAGCCTCACCAAACTTGACTCC
GTTGCGAGCCAAGAGCTCAGGGAAGACGCAACCAAGAGCTCCAAGCATGGCCCATCTGCAGTGAATCACTTCAAGCTCACGGTTCTTAGCAAAGGTTTCT
GGGTCAGCAGAGAGTCCAGCAGTGTCCCAGCCATAGTCACCAGGGAATTCGCCAGTCAAGTAGGATGGGGGCTCACCAGAGAATGGACCCAAGTACTTAA
CACGGTCTGGACCGTACCATGGGCTTCCAGAGGAAACAGCCTTGCTGGCAGTTTTCCTCATTGAAAAACGGCCATTGCCCATGAGCTCAGGGGCAGAGGG
GGTGAGCTTCACTGCCTTGCCGGCAAGAGAAGGGGAGGAAAGGGCCATTGTTGAGGCTGCCATTGTTTAAAGGAGTGTGGGTTTGAATCCTCTGTATGTT
GTTT