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Detailed information on CNT30562220


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30699961Actinidia chinensisQuercus lobata56.0343.0187.91455forward
CNT30506303Actinidia chinensisNicotiana attenuata57.0256.6785.96463forward
CNT30203004Actinidia chinensisHelianthus annuus55.9139.6986.12454forward
CNT30153746Actinidia chinensisPrunus persica53.4547.0787.79434forward

Expression of CNT30562220

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVRVLTKICI*

>peptide 2 (40 aa)
MVSELSTSRVIVFPVRVLTKICMPPRRRRTRWRVDSFWML*

Sequence

>CNT30562220
GGGCAAACATCACTTCCACTGCAATGATAAAACCACAAGAAACTGAACAACACCATCCACTGAACTAAAAGAAAAGCACAAACGATTTATTGATAACCCA
TGTTAGGGTAACACACAATACCAACTAAAATATAAAGAGAACCACATCACTCCAAATCATAGGGAAATCAAATAGAAGCCATGGACAGTTTTTGGAAACC
ACCACAGACAAGGTGAAGGGCCCTTGACTCCTGGATTTTAGAAACCTCCACGGAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGGATGTTATAATC
TGCAAGGGTTCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTG
TCAATGGTATCAGAGCTTTCAACCTCAAGGGTAATAGTTTTTCCGGTGAGGGTCTTGACAAAAATCTGCATGCCACCGCGGAGGCGGAGGACGAGGTGGA
GGGTAGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTC
TTTGTCCTGGATCTTTGCCTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATC
TAGAGAGAGAGAGAGATTGATTAGAGATAATATAGATCTGATCTCTTCTTCTTGGGATTGCAATGTGAGGGAGAGATGTGAGATTAGGAGGGTATTTGTA
GATGGAGGTTTC