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Detailed information on CNT30149619


BLAST search results

BLAST vs Swiss-Prot:
sp|A1E9I3|RPOC2_HORVU, E-value = 1e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523685Brachypodium distachyonSetaria italica7.4626.1192.5594reverse complement
CNT30703171Brachypodium distachyonQuercus lobata25.242.6782.08318forward
CNT30403985Brachypodium distachyonBeta vulgaris19.3770.5281.15244forward
CNT30220823Brachypodium distachyonHordeum vulgare27.3810.9197.39345forward
CNT30314046Brachypodium distachyonCamelina sativa25.878.5182.52326forward
CNT3082973Brachypodium distachyonBrassica juncea25.873.9182.52326forward
CNT30142437Brachypodium distachyonLolium perenne27.3818.2195.36345forward

Expression of CNT30149619

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVSLGYMVHLGGGDRASRNCERSYQYTNV*

>peptide 2 (33 aa)
MFTLSLLIENSNASSRHTGNTGETREGNPIGSQR

>peptide 3 (30 aa)
MGGASTSILVHGFSWLYGSSGGGRSSFKKL*

>peptide 4 (73 aa)
MTGTCGVNQILIELDFSIRRGSYKVFLKFSTVVIQAGFARSDHDSAMFVSVYPRGRAILLLYVDDIKLPLYSV*

>peptide 5 (41 aa)
MIRPCSYQFILEDVLFCCCMLMISNCPCIQCEKFPCLLMLE*

>peptide 6 (47 aa)
FPDIIMTLNLFLFLFFASTFGLNNILNRLYLTSEYCFHLTTTRCFVL*

Sequence

>CNT30149619
ATTTCCCGATATCATAATGACACTTAATTTGTTTCTTTTTCTCTTTTTTGCTAGCACCTTTGGGCTGAACAACATCCTTAACAGATTATACCTTACTAGT
GAGTACTGCTTCCACCTTACCACTACCCGGTGCTTTGTATTGTAGAAACCATGGGTGGGGCAAGCACTTCTATTCTGGTTCATGGTTTCTCTTGGCTATA
TGGTTCATCTGGGGGGGGGAGATCGAGCTTCAAGAAATTGTGAACGGTCTTATCAATACACAAATGTATAACTCCCCGACCTAGCCCTAGCCAATAGTAT
AGTTTAGTAGTCGGCCAAACCCCCATGCTCACGACATGTTCTTGATATTGATTGAGTTGGAGGGAGTCAGAGACTACCACGGAATCCTTCCATAGTCACC
CCGGTGACCTTCGTCACCAAAGCGTCACGACAGTTTCCAAGACCCCTCATATAATCTCCAGTGGGGAAGACGAATATGAAACCTTATATAAAAATGAGAT
CCTACAGGACGAATACGAATATGAAACCCTAGAAGACGCATATGGGAGCCCAGAGAACGAATATGGGAATCCAGAGAACGAATATAGGATTACCATATTG
ATATTCGGGCGCATGATAAACATCAGTACTCCAGTGCATTTCTCCGTCTGATTCGGAATAAATATGTTTTTGTACCCTTTCTTTAAAATGTAAAGTGGAC
GTTCCGGCACGAATCTCCGCAATTACTTGTTCGGATTTTACATATTGATCATTTTGCACTAGAATCAAGCTTTTTGAGGGAATATTCACACTATATAGAA
TATCCTGACTCTGAATAGTAACATGCAAGTCTATATAACATAGAAAAGCAGGCTGTCCATGACGGGTACGTGTGGGGTGAACCAAATTCTCATTGAATTG
GATTTTTCCATTCGAAGGGGATCGTACAAGGTGTTTTTGAAGTTCAGCACAGTGGTTATCCAGGCAGGGTTTGCTCGGAGTGATCATGATTCGGCCATGT
TCGTATCAGTTTATCCTCGAGGACGTGCTATTCTGTTGTTGTATGTTGATGATATCAAACTGCCCTTGTATTCAGTGTGAAAAGTTCCCTTGTCTTCTGA
TGCTAGAGTAGAGTGAGGGAGCTCTGGGCGGGGTTTCCCAAAAGGTAGTTTTGCCGCCATGTTCACCTTATCTTTATTAATAGAAAACAGTAATGCTTCA
TCACGACATACAGGCAACACCGGCGAGACCCGGGAAGGTAACCCAATTGGGAGTCAGAGG