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Detailed information on CNT30314046


BLAST search results

BLAST vs Swiss-Prot:
sp|P56763|RPOC1_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530066Camelina sativaEucalyptus grandis5.6134.6293.49215reverse complement
CNT30703171Camelina sativaQuercus lobata40.112.989.981537forward
CNT3019361Camelina sativaCitrullus lanatus7.9610091.8305forward
CNT30403985Camelina sativaBeta vulgaris7.9888.4484.64306forward
CNT30632296Camelina sativaVigna unguiculata21.8410087.22837forward
CNT30202316Camelina sativaPisum sativum11.9291.9588.4457forward
CNT3045209Camelina sativaPrunus dulcis4.863.4591.3184reverse complement
CNT30220823Camelina sativaHordeum vulgare37.6245.6283.911442forward
CNT3085220Camelina sativaVigna radiata8.0425.992.53308forward
CNT30541456Camelina sativaBrassica napus23.48101.2493.78900forward
CNT30234601Camelina sativaBrassica oleracea3.8931.6399.33149forward
CNT3082973Camelina sativaBrassica juncea87.2240.1196.83343forward
CNT30142437Camelina sativaLolium perenne38.2277.3182.461465forward
CNT30129950Camelina sativaCorymbia citriodora5.8745.3691.56225forward
CNT30716479Camelina sativaMalus domestica golden7.1590.1385.77274forward
CNT30155137Camelina sativaPrunus persica5.7932.2290.54222forward
CNT3057109Camelina sativaAmborella trichopoda3051.2784.351150forward
CNT3039151Camelina sativaCucumis melo22.299.5391.77851forward
CNT30149619Camelina sativaBrachypodium distachyon8.5125.8782.52326forward
CNT30104767Camelina sativaOryza rufipogon7.246.8684.42276forward
CNT30116701Camelina sativaOryza nivara3.7664.8688.19144forward

Expression of CNT30314046

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MFEARCCLIKPRITNVWKSSIAISRGNPQRCNESEGPTTITERPE*

>peptide 2 (29 aa)
MYIPIMMVFFQNPTLLFSILDKPALRRYR*

>peptide 3 (30 aa)
MKSIGFCHLSNYLSIRYYFSGPSTYLLRRN*

>peptide 4 (29 aa)
MTIPHGLSTDSIIKKCIHGFLYQFFLTHY*

>peptide 5 (58 aa)
MGFDNEFESMIAKLPFLDLDLRRILGQELWSELNRRGPNSHGFPRISFFFNTILLGII*

>peptide 6 (47 aa)
MYLRCISPSSRKRHHMDWIEGVRHPKIRIHFLSQIFTCSIPYLNRLA*

>peptide 7 (93 aa)
MSGRALLLFREAIHSDVMKVKVQRQSPSAPNNRPVSQAESREIFPLCLQLHLKMTCKPYYDHPSWVVHGFHYQEVYPRLLVPIFLDTLLIPLV*

>peptide 8 (60 aa)
MSYRTCKFYVSHLISSYPRINKFNSTLFTKLWVFFFISDHSIISTSANSTLYRPKNPFTK*

>peptide 9 (34 aa)
MPLHDFLKDFPDNRLFFTNLTLSNSYVRSQMLSN*

>peptide 10 (33 aa)
MIVTKRFIVNFNRNFSNCHRSHKGLSKLILFCR*

>peptide 11 (41 aa)
MPVTCTCRMNQILIEFYFSIIRGSYMFGSTSCKYPAGMKSS*

>peptide 12 (98 aa)
MMGLNSGGRTGKRHKTIHSGSIFVRIKCLANSIRLTKKSFLLTIFRSSHSFPVGPSSPNCFHSTNEFSIIIRKSKSANCSRIAPAPVEISRFRNISKP*

Sequence

>CNT30314046
AGAGGCTAGAAATAGATTTTCTTTCGGCGGGACGAAAGGGTATGTTCATTTGATCTTGATCTTTATGGATCGAAAAAAGAATTAGACTAGATCCGCACGA
ACTTCCTGATAATATCCATAAATGACTTGTTTTTGGTAAAAGGTGGACATTACTATATGTAAATTCGGGTGCATGGGACACATCAGTACTCCAGTGCATT
TCGCCCTCTGAGTCAGAATAAATATATTTTCTAACCCTCTCTTTAAAATGAAAAGTGTATGTTCCCTCGCGAATCTCAGCAATAACTTGTTCTGATTCCA
CATATTGATCATTTTGAACTAAAAGAAAACTTTTTGGTGGAATAGTCACGCTATGTATAATATCTTCGCTCTCAATAATTACAGATAAGTCTATATAACA
TAGAAAGGCAGGATGCCCGTGACGTGTACGTGTAGGATGAACCAAATCCTCATTGAATTTTATTTTTCCATTATAAGGGGCTCGTACATGTTCGGCAGTA
CCTCCTGTAAATACCCCGCCGGTATGAAAAGTTCTTAATGTTAGTTGAGTCCCCGGTTCGCCGATCGATTGACCCGCGATAATACCTACAGCTTCCCCCA
ATTCAACTAGGTCACCATGAGTGGGACTCCGACCATAACATAATCGACAGATCCAAGATGTACTCCGACAAGTAAAGGGAGTTCGAATAGATATTGATTG
TGTTCCAAAGGTTATTAATCGATTGACAAGTCCAATCCCAAGATCTTGATTTCGAAAGGCGACACATCGGGAACCTATATATATATCGTCTGCTAAGACA
CGACCAATTAATGTTTGGATAAAAATTCTTTCTGACATCATCCGATTTTTATTTCGAGGACTCACAGAAATCCCTCGGATAGTGCCACAATCTGTTCTAC
GTACAACAATATGTTGAACTACTTCAACAAGTCGACGCGTAAGATATCCAGCATCTGATGTGCGTACAGCAGTATCTACAACTCCTTTACGGGCTCCATA
GCAAGAAATAATATATTCTGTTAAAGACAGTCCTTCGCGTAAATTGCTTTGAATAGGTAAATCAATCATTTGTCCTTGGGGATCCGACATTAATCCTCTC
ATACCTACTAATTGATGTACTTGAGATGCATTTCCCCTAGCTCCCGAAAAAGACATCATATGGACTGGATTGAAGGGGTCCGTCATCCTAAAATTAGGAT
TCATTTCTTGTCGCAAATATTCACTTGTAGCATACCATATCTCAATAGATTGGCGTAATTTTTCTACCGCATGTACATTCCCATAATGATGGTGTTTTTC
CAAAATCCAACTTTGTTGTTCAGCATCTTGGACAAGCCAGCCCTTAGAAGGTATCGTTAAAAGATCATCAATTCCTAATGAAATGGATGTAGCAGTGGCT
TGCTGGAAACCCAGAGTCTTTACTTGATCTAGGATGTGTGATGTATATGCCATCCCGAAGTGATCTATTAATCGGCTAATAAGTCGTTTAATAGCAGTTC
CATCTATCACTTTATTGTGAAATACCAGATTGGCCCGTTCCGCCATAAGTACCTCCATATTCTGCTGAATGGGATTCGACAATGAGTTTGAGTCAATGAT
TGCAAAACTTCCTTTTCTCGATCTTGATTTGCGTAGAATTTTAGGTCAGGAACTATGGTCCGAGTTGAATCGGAGAGGTCCGAATTCACACGGGTTTCCT
AGAATTTCTTTTTTTTTTAATACCATATTATTAGGTATCATATGAACAAGCTTGAGAAAAACCTTGTATAGCTTCCTCGATTTCTCGATAAAAAGAAATA
TGACCAACTGTGGTTCGAATATATATACAAAAAGTTTCTTTTTTTACACTTCTTACTATTAGATAGTGTGCATAAATCTCATGATAGTTACCAAAAGATT
CATAGTGAACTTTAATAGGAACTTCTCTAATTGCCACCGAAGCCACAAAGGACTATCTAAATTGATTCTTTTCTGTCGATAAGCTCCAATTGCATCATAG
GAATTGCAAAAAAAGGTTCTTTCGTATACTTAGAGTTTGTTTCGTAAATTCTTTCATTTTGATAGTTTTTTCGATTACATGGATTATATCTGTTTTCACA
AATACCTCGACGGGTGCCGCTCATTAATACATAGAGTCCGATAAGCATATCTTGAGTCGGTACAGAAATGGGATCTCCAATAGCTGGAGATAAGAGATTC
ATATGAGAAAACATAAGTAAACGAGCCTCTGCTTGAGCCTCTAAAGATAAAGGCACATGAACAGCCATTTGATCCCCATCAAAGTCTGCATTGAACCCCT
TACAAACTAATGGATGTAAACAAATAGTGCGCCCTTCCACTAAAATTGGTTGGAATGACTGTATGCCTAATCTATGTAGGGTAGGTGCTCTATTCAGTAA
TACGGGATGCCCCTGCATGACTTCTTGAAGGATTTCCCAGACAATCGGCTTTTTTTCACGAATTTGACTCTTAGCAACTCCTATGTTCGAAGCCAGATGT
TGTCTAATTAAACCACGAATTACAAATGTCTGGAAGAGCTCTATTGCTATTTCGCGAGGCAATCCACAGCGATGTAATGAAAGTGAAGGTCCAACGACAA
TCACCGAGCGCCCCGAATAATCGACCCGTTTCCCAAGCAGAGTCTCGCGAAATCTTCCCTCTTTGCCTTCAATTACATCTGAAAATGACTTGTAAACCTT
ATTATGACCATCCCTCATGGGTTGTCCACGGATTCCATTATCAAGAAGTGTATCCACGGCTTCTTGTACCAATTTTTCTTGACACATTACTAATTCCCCT
GGTGTAGATCTACTTGTTGTTAATAGATCGGTAAGAGTATTGTTCCGATAGATAACTCTTCTATAGAGTTCATTAATATCTGAACTCATTAGTTTACCCC
CTTCTATCTGAATGATGGGTCTCAACTCGGGAGGAAGAACCGGTAAGAGACATAAAACCATCCATTCCGGTTCTATATTTGTTCGAATAAAATGCTTAGC
TAATTCCATACGTCTAACTAAAAAATCTTTTCTTCTTACAATTTTTCGATCTTCCCATTCATTCCCCGTAGGCCCTTCTTCTCCTAATTGTTTCCATTCT
ACCAACGAATTTTCTATAATAATTCGCAAATCTAAATCGGCTAATTGTTCTCGGATAGCACCCGCCCCAGTAGAAATTTCTCGATTTCGAAATATATCGA
AACCTTGAGTAGTAAAAAAAAGTGGGATGCTGTATTTCCAGGATTGAATTTCATATTCAAATAAACCTCGTAATCGTAAGAAAGTAGGTTTTTTAGTTAT
GGGCCTAGCAAAAGAAAAATCGCAGTATACTAGGCCTTCTAATTCTTTAAGAGGTTTATCTAAAAGATTCGCAATATAACTAGGAAGACGTTTCAAATAC
CATACATGAGTTACCGGACATGTAAGTTTTATGTATCCCATTTGATATCTTCGTATCCGAGAATCAACAAATTCAACTCCACATTGTTCACAAAACTTTG
GGTCTTCTTTTTCATCTCCGATCACTCGATAATTTCCACAAGCGCAAATTCCACTCTTTATAGGCCCAAAAATCCTTTCACAAAATAATCCATCTTTTTC
CGGTTTATTGGTTTTATAATGAAAAGTATAGGGTTTTGTCACCTCTCCAACTATCTCTCCATTAGGTATTATTTTAGTGGCCCAAGCACTTATTTGCTGA
GGAGAAACTAATCCAATTCGGAGTTGTTGATGTTTATACCGATCGATCATATAAGAAATTTTGTGATTCATTCCGATTAAACTTCCTTCCTATTAATCTG
GAAATTCTTCTCAGATACAAGGAAATGATTCAG