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Detailed information on CNT30220823


BLAST search results

BLAST vs Swiss-Prot:
sp|A1E9I2|RPOC1_HORVU, E-value = 0.0

BLAST vs NONCODE:
NONVVIT002936, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530066Hordeum vulgareEucalyptus grandis6.834.6292.56215reverse complement
CNT30703171Hordeum vulgareQuercus lobata45.312.0284.361432forward
CNT30403985Hordeum vulgareBeta vulgaris9.5286.9980.4301forward
CNT30202287Hordeum vulgarePisum sativum7.7529.5587.76245forward
CNT3045209Hordeum vulgarePrunus dulcis2.753090.887reverse complement
CNT3085220Hordeum vulgareVigna radiata9.7425.988.64308forward
CNT30541456Hordeum vulgareBrassica napus9.8735.186.22312forward
CNT30234601Hordeum vulgareBrassica oleracea4.1127.686.92130forward
CNT30314046Hordeum vulgareCamelina sativa45.6237.6283.911442forward
CNT3082973Hordeum vulgareBrassica juncea45.6217.383.981442forward
CNT30142437Hordeum vulgareLolium perenne46.1276.9495.41458forward
CNT30716479Hordeum vulgareMalus domestica golden7.476.9780.77234forward
CNT3057109Hordeum vulgareAmborella trichopoda17.8125.182.59563forward
CNT30149619Hordeum vulgareBrachypodium distachyon10.9127.3897.39345forward
CNT30104767Hordeum vulgareOryza rufipogon18.66100.1792.37590forward
CNT30116701Hordeum vulgareOryza nivara6.5292.7992.72206forward

Expression of CNT30220823

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMILGKSECPPKAKGRGIAESNFLVQVVYE*

>peptide 2 (29 aa)
MGSFSQIFLLAILTLEVARFVIKSRITNS*

>peptide 3 (35 aa)
MTGTCGVNQILIELDFSIRRGLYKVGSTPVNTPPV*

>peptide 4 (34 aa)
MSPHNFLKYFPYNGFLFPNFPFSNPDIRSGAFRD*

>peptide 5 (54 aa)
XYWICTYLRIISINGLFLVIDEDYHIDIRAHGKHQYSSAFCRLIQNKYAFVPFL*

>peptide 6 (43 aa)
MLNYFNKSTCKISSICCSYSSIYNPFAGSIAGNYIFCQRKSLA*

Sequence

>CNT30220823
NNTATACTGGATCTGCACATACTTACGGATAATATCCATAAATGGCTTGTTTTTGGTAATCGACGAAGATTACCATATTGATATTCGGGCGCATGGTAAA
CATCAGTACTCCAGTGCATTTTGCCGTCTGATTCAGAATAAATATGCTTTTGTACCCTTTCTTTAAAATGTAAAGTGGACGTTCCGGCACGAATCTCCGC
AATTACTTGTTCAGATTTTACATATTGATCATTTTGCACTAGAATCAAGCTTTTTGAGGGAATATTCACACTATATAGAATATCTTGACTCTGAATAGTT
ACATGCAAGTCTATATAACATAGAAAAGCAGGCTGTCCATGACGGGTACGTGTGGGGTGAACCAAATTCTCATTGAATTGGATTTTTCCATTCGAAGGGG
ATTGTACAAGGTCGGCAGTACCCCTGTGAATACTCCGCCAGTATGAAAAGTTCTTAATGTTAGTTGAGTCCCTGGCTCCCCAATTGATTGACCCGCAATA
ATACCTACGGCTTCTCCCAATTCCACCAGATCACTATGAGTAGGACTCCGGCCATAGCATAATTGACAGATCCAAGAAGTGCTTCGGCAAGTAAAGGGGG
TTCTAATATATATTGGTTGTGCTCGAAATGGTTGTGCTCGAAAGGCAGTTATGAATCGATTGACTAATCCAATTCCAATATCTTGATTTCGCGCGGCAAT
GCATCGTGAACCGATATATATATCGTGTGCTAATACATGACCAATTAGTGTTTGGACAAAAAGTTTTTCCGTCATCCCATTTTGAGGACTTACAAAAATA
CCTCGGATAGTACCACAATCTCTTCTACGCACAATAATATGTTGAACTACTTCAACAAGTCTACGTGTAAGATATCCAGCATCTGCTGTTCGTACAGCAG
TATCTACAACCCATTTGCGGGCTCCATAGCAGGAAATTATATATTCTGTCAAAGAAAGTCCCTCGCGTAAATTGCTTTGAATAGGTAAATCAATCATTTG
TCCTTGAGGGTCCGACATTAATCCTCTCATACCTACTAATTGGTGTACTTGAGATGCATTTCCTCTGGCTCCTGAAAAAGACATTAGATAGACTGGATTA
GAAGGATCCATTATCCGAAAATTTGAATTCATTTCTTGTTTCAAATATTCACTTGTCGCATACCATATCTCAACAGATTGGCGTAATTTTCTACCGCGTG
TACAGCCCCATAATAATAATGTTTCTCCAAAAGAAAACTCTGTTGTTCCGCGTCTTGGACTAACCATCCCTTAGAGGGTATTGTTAAAAGATCCTCGATT
CCTAACGAAATCGATGTAGTAGTGGCTTGATAGAAGCCCAGAGTCTTTAGTTGATCCAGTATATGGGATGTATATCCCATTCCAAAATGATCTATTAATC
TGCTAATAAGTCGTTTCATACCAGTTCCGTCTATCTCTTTATTATGAAAGACCAGATTNGCGTCTTGGACTAACCATCCCTTAGAGGGTATTGTTAAAAG
ATCCTCGATTCCTAACGAAATCGATGTAGTAGTGGCTTGATAGAAGCCCAGAGTCTTTAGTTGATCCAGTATATGGGATGTATATCCCATTCCAAAATGA
TCTATTAATCTGCTAATAAGTCGTTTCATACCAGTTCCGTCTATCTCTTTATTATGAAAGACCAGATTGGCCCGTTCCGCCATACATAAGTACCCCCTTT
TCGGCTGAGTAGGATTCGACAATTGCTGAGTAGGATTCGACAATGGGCCTGAGTCAGTGATTCGAAAATTTAATTAACTTAATTGCCTCAATCTCAATCT
GGATTCGCATGGCAAATAATGATGATACTAGGGAAATCGGAATGCCCCCCGAAAGCAAAGGGGAGGGGCATCGCCGAATCTAACTTTCTTGTTCAGGTAG
TGTATGAATAGGCGTGACTAAATCCTTGTACGGCTTCCTCTATTTCTCTATAAAAAGAAATATGACCAAGAGTGGTTCGAATGTATATCGAACGAATTTC
TTTTTTTCTATTTCCCATTATTAGATAGTGAGCATAAATCTCATGATAAGTCCCCAAAGATTCATATTGAATTTCAATCGGAACTTCTCTTGACCCAATG
ACGCGTTGATCCAGGTTCCATCGTAGCCACAAGGGACTATCTAAACTGATTAGTTTTTGTCTATAAGCTCCCAGTGCATCATAAGAACTAGAAAAATGGG
GTTCTTTATCTTTCTTATACTTAGAATTATTATTATTGTAATTGACTTTTAAATTTGGATAGTTTCTGAAACTATTATATCTATTTGCACAAATACCTCG
ACGCTTTCCAATTGTTAATACATAAAGCCCGATAAGCATGTCTTGGGTTGGTACGCAAATAGGATCCCCAATAACGGGAGATAAGAGATTCATATGAGAA
AACATAAGTAAACGGGCTTCCGCCTGAGCTTCCAAGGATAAAGGTAGATGAACAGCCATTTGATCTCCATCAAAGTCTGCATTGAAACCCTTACACACTA
ATGGGTGTAAAGAAATAGTACGCCCCTCTACTAAAGTGGGTTGAAAGGCATGTATGCCTAATCTATGCAGAGTAGGTGCTCTATTTAACAGTACAGGATG
TCCCCGCATAACTTCTTGAAGTATTTCCCATACAATGGGTTCCTTTTCCCAAATTTTCCTTTTAGCAATCCTGACATTAGAAGTGGCGCGTTTCGTGATT
AAATCGCGAATTACAAATAGCTGAAAAAGCTTTATTGCTATCTCTAGAGGTAATCCACATTGATGTAATGAAAGCGAAGGACCCACAACAATGACAGAAC
GCCCCGAGTAATTGACCCGTTTCCCAAGCAGAGTCTCGCGAAACCTTCCCTCTTTACCTTCAATTACATCTGAAAGTGATTTGTATACTTTATTTTGACC
ATCCCTCGTCGGTTGCCCGCGGGACCCACTATCAAGAAGTGTATCCACGGCTTCTTGTACCAATTTTTCCTGGCACATTACTAAATCTGCTGGCGCTAAT
TCACTTCTTTTTAATAGATAGGCAAGATTGTTGTTCCGACGGATAACTCTCTTATAAAGTTCATTATTGTCTGAAGTCACTACTTTATCTCTAGACCTAT
AAACAATAGGTCTCAATTCGGGAGGAAGAACCGGTAATAAGCACAAAACCATCCATTTTGG