Detailed information on CNT30403985


BLAST search results

BLAST vs Swiss-Prot:
sp|P11704|RPOC2_SPIOL, E-value = 3e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Beta vulgarisQuercus lobata85.262.4886.1295forward
CNT30493988Beta vulgarisOlea europaea23.996.8485.5483forward
CNT30220823Beta vulgarisHordeum vulgare86.999.5280.4301forward
CNT30314046Beta vulgarisCamelina sativa88.447.9884.64306forward
CNT3082973Beta vulgarisBrassica juncea86.713.685300forward
CNT30142437Beta vulgarisLolium perenne37.576.8682.31130forward
CNT30149619Beta vulgarisBrachypodium distachyon70.5219.3781.15244forward

Expression of CNT30403985

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MNIVVCKFGCMVHIGTPVHFSFCIRINMFSNPFLKIQD*

>peptide 2 (39 aa)
MSPCEFQQSLTRIQHIDRFELKENFLAEYSHYVEYLHFQ*

Sequence

>CNT30403985
AGCGAAAAAGGAACTACACTGGATCTGAACGGCCTTCCGGATAATATCCATAAATGACCTGTTTTTGGTAAAAGATGAACATTGTCGTATGTAAATTCGG
GTGCATGGTACATATCGGTACTCCAGTGCATTTCTCCTTCTGTATCAGAATAAATATGTTTTCGAACCCTTTCCTTAAAATTCAAGATTGATGTCCCCGT
GCGAATTTCAGCAATCACTTACTCGGATTCAACATATTGATCGTTTTGAACTAAAAGAAAACTTTTTGGCGGAATATTCACATTATGTAGAATATCTTCA
CTTTCAATAGTGACATACAAGTCGATATAACATAGAAAGACGGGGT