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Detailed information on CNT30142437


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9G2|RPOC2_LOLPR, E-value = 0.0

BLAST vs NONCODE:
NONVVIT002936, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530066Lolium perenneEucalyptus grandis11.3534.6290.23215reverse complement
CNT30703171Lolium perenneQuercus lobata79.2612.683.021502forward
CNT30403985Lolium perenneBeta vulgaris6.8637.5782.31130forward
CNT3045209Lolium perennePrunus dulcis4.0126.2190.7976reverse complement
CNT30220823Lolium perenneHordeum vulgare76.9446.1295.41458forward
CNT3085220Lolium perenneVigna radiata16.2525.987.01308forward
CNT30234601Lolium perenneBrassica oleracea5.722.9386.11108forward
CNT30314046Lolium perenneCamelina sativa77.3138.2282.461465forward
CNT3082973Lolium perenneBrassica juncea77.0417.5282.671460forward
CNT30149619Lolium perenneBrachypodium distachyon18.2127.3895.36345forward

Expression of CNT30142437

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLNYFNKSTCKISSICCSYISIYNPFASSIAGNYIFCQRKSLA*

>peptide 2 (73 aa)
MHFLWLLKKTLDRPDKKDPLSENSNSFLVSNIHLSHIISQRIGVIFLPRVSPHNNSVSPQKNFVVPRLGLTIP*

>peptide 3 (39 aa)
MMGTCGVNQILSELDFSIRRGSYKVSSTPCEYSASMKSS*

Sequence

>CNT30142437
GGCCATTAGGCATGATTCGAACCAACATTGAATAATCAAAAATTTCCCTATCTTTTTTACCATAAGTATTCATTTGATCTTGATCCTTCTGAAGTGAAAA
AGACGCTATACTGGATCTGCATCTACTTACTGACAATATCCATAAATGGCTTGTTTTTGGTAATCGACGAAGATTACCATATTGATATTCGGGCGCATGG
TAAACATCAGTACTCCAGTGCATTTCGCCGTCTGATTCAGAATAAATATGCTTTTGTACCCTTTTTTAAAATGTAAAGTGGGGGTTCCGGCACGAATCTC
CGCAGTTACTTGTTCAGATTTTACATATTGATCATTTTGCACTAGAATCAAGCTTTTTGAGGGAATATTTACACTATATAGAATATCCTAACTCCGAATA
GTTACATGCAAGTCTATATAACATAGAAAAGCAGGCTGTCCATGATGGGCACGTGTGGGGTGAACCAAATTCTCAGTGAATTGGATTTTTCCATTCGAAG
GGGATCGTACAAGGTCAGCAGTACCCCCTGTGAATACTCCGCCAGTATGAAAAGTTCTTAGTGTTAGTTGAGTACCTCGCTCCCCAATTGATTGACCCGC
AATAATACCTACGGCTTCTCCCAATTCGACCAGATCACTATGAGTGGGACTCCGGCCATAACATAATTAACAGATCCAACAAGTGATCCGGCAAGTAAAG
GGGGTTCTAATATATATTGGTTGTGCTAGAAATGGTTGTGCTCGAAAGGCAGTTATGAATCGATTGACTAATCCAATTCCAATATCTTGATTTCGAGCGA
CAATGCATCGTGAACCGATATATATATCGTCTGCTAATACACGACCAATTAGTGTTTGGACAAAAAGTTTTTCCGTCATCCCATTTTAAGGACTCACAGA
AATACCTCAGGTAGTACCACATTCTCTTCTACGCACAATAATATGTTGAACTACTTCAACAAGTCTACGTGTAAGATATCCAGCATCTGCTGTTCGTACA
TCAGTATCTACAACCCCTTTGCGAGCTCCATAGCAGGAAATTATATATTCTGTCAAAGAAAGTCCCTCGCGTAAATTGCTTTGAATAGGTAAATCAATCA
TTTTTCCTTGAGGGTCCGCCATTAATCCTCTCATACCTACTAATTGGTGTACCTGAGATGCATTTCCTTTGGCTCCTGAAAAAGACATTAGATAGACCGG
ATAAGAAGGATCCGTTATCCGAAAATTCAAATTCATTTCTTGTTTCAAATATTCACTTGTCGCATATCATATCTCAACGGATTGGCGTAATTTTTCTACC
GCGTGTATCGCCCCATAATAATAGTGTTTCTCCACAAAAAAACTTTGTTGTTCCACGTCTTGGACTAACCATCCCTTAGAGGGTATTGTTAAAAGATCCT
CGATTCCTAACGAAATGGATGTAGTAGTGGCTTGATGGAAGCCCACAGTCTTTAGTTGATACAGTATATGGGATGTATATCCCATTCCAAAATGATCTAT
TAATCTGCTAATAAGCCGTTTCATACCAGTTCCGTCTATCTCTTTATTATGAAAGACCAGATTGGCCCGATCCGTCATACATAAGTACCCCCTTTTCGGC
TGAGTAGGATTCGACAATTGCTGAGTAGGATTCGACAATGGGCTTGAGTCCGTGATTTGAAAATTTAATTAACTTCATTTCCTTAATCTCAATCTGAATT
CGCGCGGCAAAAATGATGATACTAGGGAAACCGCAATGCCCCCCGAAAGGGGAGGGGCATCACCGAATCTAACTTCCTGGTTTAGATAGTGTATGTCGTC
GCCTGACTAAATCCTTGTATGGCTTCCTCTAGTTATCTATAAAAAGAAATATGACCAAGAGTGGTTCAAATGTATATAGAACGAATTTCTTTTTT