Detailed information on CNT30362245


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30271054Sorghum bicolorChenopodium quinoa31.72.5484.5284forward
CNT30554452Sorghum bicolorOryza glaberrima34.7243.8194.5792forward
CNT30132520Sorghum bicolorLolium perenne35.8510.4590.5395forward
CNT3013829Sorghum bicolorZea mays24.159.3696.8864forward
CNT30109025Sorghum bicolorOryza longistaminata36.9811.6991.8498forward
CNT30577030Sorghum bicolorOryza barthii36.9815.3493.8898forward
CNT30580727Sorghum bicolorEchinochloa crusgalli4011.2495.28106forward

Expression of CNT30362245

Peptides detected in this lncRNA

>peptide 1 (81 aa)
AAAAALKSAFRAKSHLNVHNDTSIQEICHVLSEALHVISIQLPQTEKTDPRSQRQVLPWKRGWSSTPRVRYSMFLTPSRLV*

>peptide 2 (29 aa)
MEERLVVHSKSEILDVPHPFPVGVEDVGIV

Sequence

>CNT30362245
CGCAGCTGCTGCTGCTTTGAAGTCTGCTTTCAGGGCCAAGTCCCACCTCAATGTCCACAATGACACCAGCATCCAAGAAATCTGCCATGTTCTCTCTGAA
GCTCTTCATGTAATCAGCATACAGCTGCCACAGACAGAGAAGACCGACCCCAGGTCACAACGTCAAGTTCTTCCATGGAAGAGAGGCTGGTCGTCCACTC
CAAGAGTGAGATACTCGATGTTCCTCACCCCTTCCCGGTTGGTGTAGAAGATGTCGGGATTGTCC