Detailed information on CNT30680718


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521677Triticum urartuSetaria italica19.7227.8988.5770forward
CNT30132420Triticum urartuLolium perenne39.7222.8291.49141forward
CNT30583123Triticum urartuEchinochloa crusgalli24.7918.0786.3688forward

Expression of CNT30680718

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQPRHSSAPCRRKAGCARRRAQGAPRRPGARWTPLLAAV*

>peptide 2 (29 aa)
PRSRSCHRRTAGRGGSRPGRGTPQGNRSR*

>peptide 3 (99 aa)
LGVGLATVGLLAEEEADLGEELLRGTVVGDGLLGGGVDYNGEEGQRGAPAGDDGSVRCSLVILLRLADEKLGAPDGGRRARRGGQARGGRHCSLLFSLA*

>peptide 4 (68 aa)
MVFLVVGLIITERRDSAARRLVTTAASDAASSFFCALQTKSWVRPTAGAGRAEAARRAVDAIARCCLA*

Sequence

>CNT30680718
CCTCGGAGTCGGTCTTGCCACCGTAGGACTGCTGGCCGAGGAGGAAGCCGACCTGGGAGAGGAACTCCTCAGGGGAACCGTAGTCGGTGATGGTCTTCTT
GGTGGTGGGGTTGATTATAACGGAGAGGAGGGACAGCGCGGCGCGCCGGCTGGTGACGACGGCAGCGTCAGATGCAGCCTCGTCATTCTTCTGCGCCTTG
CAGACGAAAAGCTGGGTGCGCCCGACGGCGGGCGCAGGGCGCGCCGAGGCGGCCAGGCGCGCGGTGGACGCCATTGCTCGCTGCTGTTTAGCTTAGCTTA
GGCAGGACTGTGCGTGAGTGGCGTGGGTATGGTGTGTGTCGCGTTAACTAAGGTG