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Detailed information on CNT30104645


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENB0|NU5C_ORYNI, E-value = 5e-67

BLAST vs NONCODE:
NONORUT002106, E-value = 9e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30294219Oryza rufipogonTriticum aestivum16.959.9496.1205forward
CNT30219967Oryza rufipogonHordeum vulgare8.0822.7496.9498reverse complement
CNT30586565Oryza rufipogonMusa acuminata9.4825.2787.83115forward
CNT30552960Oryza rufipogonOryza glaberrima16.940.28100205reverse complement
CNT30342876Oryza rufipogonEragrostis tef16.5756.4694.53201forward

Expression of CNT30104645

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRRRFFVAVGTRKSPNPIDIITGSGRRGITHAY*

>peptide 2 (37 aa)
MAVPKKRTSMSKKRIRKNLWKKKTYFSIVQSYSLAKSR

>peptide 3 (34 aa)
SIEKTYINKKSQISLIVRHIIITINKNQDSYSSN*

>peptide 4 (80 aa)
MFHKKRNCNFYLKILLQFFYKIEKSFRFTKLILIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFLLENFTSIFL*

Sequence

>CNT30104645
AGTATTGAAAAAACTTATATAAACAAAAAATCTCAAATATCCCTCATCGTGAGACATATAATCATCACTATAAATAAGAACCAGGATTCCTACAGTAGTA
ATTAGTATTAACATAATAGAAGTAAGCGGGTCGATTAAGTATCCAAATTCTAAGGAAAAATCATTATTGACGGTCCAAGACCATAGATATTGATAGATAG
AACTTCCATTTATTTGTTGAATAGACAGGTGAACTGAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATAGCTATACTTAAAAGTAAAACACTAGGAAAAGCCCATATGCGACGAAGATTTTTT
GTTGCTGTTGGAACAAGAAAAAGTCCAAACCCCATTGACATAATAACTGGAAGTGGGAGAAGAGGGATTACCCATGCATATTGATATGTATGTTCCATAA
GAAAAGAAATTGCAATTTTTACTTGAAAATTTTACTTCAATTTTTCTATAAAATTGAAAAAAGTTTCCGATTCACCAAACTAATTCTTATCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATTTT
TACTTGAAAATTTTACTTCAATTTTTCTATAAAATTGAAAAAAGTTTCCGATTCACCAAACTAATTCTTATCTTTTTCTGAACGAATAAAAAAATACTAG
AATTCTTAATTTTTCAAAAATTTTCTTATTGAAACAATCAAAAAATAAGAATAGGTTTTGTTGGTTAAAGTCAAAAAGTTAATGAAATAACTTCGTTACC
TAGTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTAAATACTAAGAAAAAGAAGAAAGATGGATTGATTTGCGGCAATAGATGTCTTTCACATACAACTAGAAAAAAGTAATTTCCTTTTTGAATG
GCAGTTCCAAAAAAACGTACTTCGATGTCAAAAAAGCGTATTCGTAAAAATCTTTGGAAGAAAAAGACTTATTTTTCCATAGTACAATCTTATTCTTTAG
CAAAATCAAGATC