CANTATAdb - search

Detailed information on CNT30552960

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENA9|RK32_ORYNI, E-value = 8e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30104645	Oryza glaberrima	Oryza rufipogon	40.28	16.9	100	205	reverse complement

Expression of CNT30552960

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MILILLKNKIVLWKNKSFSSKDFYEYAFLTSKYVFLELPFKKEITFF*

Sequence

>CNT30552960
GTTTGTTCTAAGAATATTGTACCGAGGAATTCGACACATAAAAGTAAACTCATTAATTAATCCTAATTATTCCTAATTATTCATATTAAATAATTGGAAT
TTTTTGGGGATAGGTCAATTCATATTATCCCAAAACCCTATTATTTGTTTGTTTGTTGCCGAGAAAAACCCTTTGGTTTTGGATGCTCGCTGACGCCAGA
AAATGATCTTGATTTTGCTAAAGAATAAGATTGTACTATGGAAAAATAAGTCTTTTTCTTCCAAAGATTTTTACGAATACGCTTTTTTGACATCGAAGTA
CGTTTTTTTGGAACTGCCATTCAAAAAGGAAATTACTTTTTTCTAGTTGTATGTGAAAGACATCTATTGCCGCAAATCAATCCATCTTTCTTCTTTTTCT
TAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTAT
ATATTTTTT