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Detailed information on CNT30342876


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENB0|NU5C_ORYNI, E-value = 1e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586565Eragrostis tefMusa acuminata30.924.1886.36110forward
CNT30236419Eragrostis tefBrassica oleracea41.857.6385.91149forward
CNT30362263Eragrostis tefSorghum bicolor33.4313.7694.96119forward
CNT30360933Eragrostis tefLactuca sativa98.3117.6983.14350forward
CNT30104645Eragrostis tefOryza rufipogon56.4616.5794.53201forward
CNT30336526Eragrostis tefCynara cardunculus51.1216.5986.26182forward

Expression of CNT30342876

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRRRFFVAVGIRKRPSPIDIITGSGRRGITQAY*

Sequence

>CNT30342876
CCCTCATCATGAGACATATAATCGTCACTATACATAAGAACCAAGATTCCTACAGTAGTAATTAGTATTAACATAATAGAAGTAAGGGGATCAATCAAGT
ATCCAAATTCTAAGGAAAAATCATTATTGATGGTCCAAGACCATAGATATTGATAGATAGAACTCCCTTTTATTTGTTGAATAGACAGGTGAACTGAGAA
TACCAGAGCTATACTTAAGAGTAAAATACTAGGAAAAGCCCATATGCGACGAAGATTTTTTGTTGCTGTCGGAATAAGAAAAAGACCAAGCCCCATTGAC
ATAATAACTGGAAGTGGGAGAAGAGGGATTACCCAGGCATATTGATATGTATGTTC