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Detailed information on CNT30294219


BLAST search results

BLAST vs Swiss-Prot:
sp|A1E9N8|RK32_HORVU, E-value = 5e-20

BLAST vs NONCODE:
NONORUT002106, E-value = 3e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30219967Triticum aestivumHordeum vulgare41.5232.9597.18142reverse complement
CNT30556070Triticum aestivumOryza glaberrima93.5727.6893.75320reverse complement
CNT30104645Triticum aestivumOryza rufipogon59.9416.996.1205forward

Expression of CNT30294219

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KMLKNSCCLIRIRQNEVKNNSKFKYLSVSKYKY*

>peptide 2 (36 aa)
MAVPKKRTSMSKKRIRKNIWKKNTYFSIVQSYSLVK*

Sequence

>CNT30294219
AAAAATGTTAAAAAATTCTTGTTGTCTTATCCGCATTAGACAAAATGAAGTAAAAAATAATTCCAAATTTAAGTATCTTTCAGTATCTAAGTATAAATAC
TAATAAAAAGAAGAAAGAAGGATTGATTTGCAGCAATAGATGTCTTTCACATACAACTAGAAAAAAGTAATTTCCTTTTTGAATGGCAGTTCCAAAAAAA
CGTACTTCAATGTCAAAAAAGCGTATTCGTAAAAATATTTGGAAGAAAAACACTTATTTTTCCATAGTACAATCTTATTCTTTAGTAAAATGAAGATCAT
TTTCGAGCGGTAATGAGCATCCAAAACCAAAGGGTTTTTCTG