Detailed information on CNT30219967


BLAST search results

BLAST vs Swiss-Prot:
sp|A1E9N8|RK32_HORVU, E-value = 7e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30294219Hordeum vulgareTriticum aestivum33.6442.497.24145reverse complement
CNT30556070Hordeum vulgareOryza glaberrima51.5119.290.54222forward
CNT30104645Hordeum vulgareOryza rufipogon23.438.3397.03101reverse complement

Expression of CNT30219967

Peptides detected in this lncRNA

>peptide 1 (55 aa)
NTPLSIIFIIKYEHSSMKIMKSSLIGKEYLAHSIPNKTFFIVYIRGVCYKNIVPK*

>peptide 2 (34 aa)
MILILLKNKIVLWKNKSFSSKYFYEYAFLTLKYVW

Sequence

>CNT30219967
TGAATACTCCACTTTCCATAATTTTCATAATAAAATATGAGCATTCTAGTATGAAAATTATGAAAAGTTCATTGATAGGAAAAGAATACTTAGCACACAG
TATACCAAACAAAACTTTTTTTATTGTATATATAAGAGGGGTTTGTTATAAGAATATTGTACCGAAGTAATTCGACACATAAAATACATTCAAAGAAGAA
TCCAAATTATTAAATAATTGGAATTCTTTTTTGAAAAATCAATTCATATTATTCCAAAATCTTATTATTTGTTTGTTTGTTGCCCAGAAAAACCCTTTGG
TTTTGGATGCTCATTACCACTGGAAAATGATCTTGATTTTACTAAAGAATAAGATTGTACTATGGAAAAATAAGTCTTTTTCTTCCAAATATTTTTACGA
ATACGCTTTTTTGACATTGAAGTACGTTTGG