Detailed information on CNT30586565


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30236419Musa acuminataBrassica oleracea23.35.4284.91106forward
CNT30342876Musa acuminataEragrostis tef24.1830.986.36110forward
CNT30362263Musa acuminataSorghum bicolor25.2713.2987.83115forward
CNT30360933Musa acuminataLactuca sativa26.376.0787.5120forward
CNT30104645Musa acuminataOryza rufipogon26.379.8988.33120forward
CNT30337279Musa acuminataCynara cardunculus26.3745.9888.33120forward

Expression of CNT30586565

Peptides detected in this lncRNA

>peptide 1 (34 aa)
HNRRIFFVAVGISRSPNPIDTVTGSGRKGIIHAY*

Sequence

>CNT30586565
CATAATCGACGAATATTTTTTGTTGCTGTCGGAATCAGTAGAAGTCCAAATCCTATTGACACAGTAACTGGAAGTGGAAGAAAAGGTATTATCCATGCAT
ATTGATATGTATGTTCCATAAGAAAACAAAATGAAATCTTTAATAATTCTACTATTCTAGTCTAGTCTTAGTAGAATATTCTATTCTGGTAATTTATAGC
CATATTATATAGTATAATAAGAAAAAAGAGTTATACCAAAAGGAGTACTTGATTCTAATTATGTTTTAATAAAATTATATGTTTTAATAGGTTTAAAATA
TATTTTCAAACAGGTTTTAAATATATTTTTTAATAGGTTTTAAATATATTTTTTAATAGGTTTTAAACATATTCGAAAATGCTTTTTTAAAAACTATTCT
ACCAGGGAATAAGTATAGATAATGACTAAAAGGAACAATCTATTTTGAACAAAAC