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Detailed information on CNT30102711


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000009, E-value = 4e-176

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695924Oryza rufipogonOryza sativa24.0718.7897.66342forward
CNT30110517Oryza rufipogonOryza longistaminata36.1767.4592.02514forward
CNT30577391Oryza rufipogonOryza barthii23.7223.791.99337reverse complement
CNT30116366Oryza rufipogonOryza nivara22.2497.8397.78316forward
CNT30550395Oryza rufipogonOryza brachyantha7.9528.8391.15113reverse complement

Expression of CNT30102711

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQPSIKKCMHNVLQLFYIKHNMPLYSLKSQ*

>peptide 2 (32 aa)
MIFTCVHIPICNQEIHLILLFLYFFESLPAHA*

>peptide 3 (54 aa)
MVKFSIRQSKVSCNVTEWSREKHQKTSSLLHFSSKNLIDFFLLPPFPIDKGLWN*

>peptide 4 (39 aa)
MGRQESCLLNELIPEIASSYKNASSFILTGLKWVNQSSG*

Sequence

>CNT30102711
TATGGGAAGACAGGAAAGCTGTCTGTTGAACGAGCTGATCCCAGAAATCGCTAGCTCCTACAAAAACGCAAGTTCTTTCATTCTCACAGGACTCAAGTGG
GTGAATCAATCAAGTGGGTGAATCAATACCGTTCATCCCTCTTCATCTATCTTCTGTCTGCATATATTTGTAGCAAGAATCAGTGGTGTTGCATTGGTCG
ACTTCACTGTATGATCTTTACTTGCGTACATATACCTATTTGCAATCAGGAAATACACCTCATTTTATTGTTTCTATACTTCTTTGAGTCACTTCCTGCA
CACGCCTGAGATGAGTGACAGTTGGAGTTGATAAAGGGCTATATAGATGGTGAAATTTTCTATACGTCAATCAAAAGTTTCCTGCAATGTCACTGAATGG
TCACGAGAGAAACATCAGAAGACGTCCTCCCTACTCCATTTCTCATCTAAAAACCTAATCGATTTCTTCCTACTACCTCCATTCCCAATTGATAAAGGGT
TATGGAATTGATAAAGGGTTATGGAGGGAGTAGTAAGGCCCTGTTTAGATGGGACTAAAACTTTTAAGTCCCTATCACATCGGATGTTTGAAAATTAATT
ATAAATATTAAACGTAGACTATTAATAAAACCTATCCATAATCTTGGACTAATTTGCGAGACGAATCTAATGAGCCTAATTAATCCATGATTAGCCTATG
TGATGCTACAGTAAACATTCTCTAATTATAGATTAATTAGGCTTAAAAAATTTATCTCGTGAATTAGCTTTTATTTATGTAATTAGTTTTTGTAAGTAGT
CTATATTTAATACTCTAAATTAGTGTCTAAAGAAAGGGACTAAAGTTAAGTCCCTGGATGTAAACACCACCTAAGTTACGTAACCAGGAATAACCAGGGT
TTTTGGAAATTATTCACTACTTCACCGTCATTCCGCCCAGGCGGCGCGCCCCAGGATCTAGTATCACATTCATATAAATCGCCTACGAAGTATATGCGTC
ACAAACAAAGCCAGGGAAAAAAGATGTTTGTCTATACAGACGCTCATAAACTATAAAATGAAAAAAATATAGCTTCCATCTCAGGAAAAGCATATACTCA
GTATCCTATCGAATATATATAATATAAACATATCGATCAATAGCACCGTAACATAAAGATAACCAAAACCAAGGCAAAACAGATGAGGCATAAAATCAAC
ACAGAATTTAACGAGACGAACAATCTTGTGTGAAAGGGTGTCTAAAACAAGCGCTATCGAAAAGCTATCCTAATGCAGCCCTCAATCAAAAAGTGCATGC
ACAACGTTCTTCAACTGTTCTATATCAAACACAACATGCCACTATATTCCCTTAAATCGCAATAAGATAATCCCCTCAATAACCAAATAGAGCATCGACA
CCTCACAATAAAAATCATTCA