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Detailed information on CNT30577391


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002672, E-value = 2e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695924Oryza barthiiOryza sativa23.4218.2993.39333reverse complement
CNT30110945Oryza barthiiOryza longistaminata23.1434.6393.31329forward
CNT30102711Oryza barthiiOryza rufipogon23.723.7291.99337reverse complement
CNT30116366Oryza barthiiOryza nivara22.599.0791.56320reverse complement
CNT30550395Oryza barthiiOryza brachyantha7.9528.8393.81113forward

Expression of CNT30577391

Peptides detected in this lncRNA

>peptide 1 (34 aa)
SISTGAELSAVKFNDPSICLQAKSAIMAFHQLRI*

>peptide 2 (41 aa)
MIQAYVSKLSQPLWPSINYVYNPSASQLILTHINLSFQQTT*

>peptide 3 (29 aa)
MSVRLIVKKQMKRNCGYTPDSNHYRVKTC*

Sequence

>CNT30577391
AATCGATCAGTACAGGAGCCGAGTTGTCTGCTGTGAAATTCAATGATCCAAGCATATGTCTCCAAGCTAAGTCAGCCATTATGGCCTTCCATCAATTACG
TATATAATCCCAGTGCATCACAACTAATCCTGACACACATAAATTTGTCTTTCCAGCAAACCACTTAACACATATAGTACAAGTTATTTTAGATAATTTG
GCCTGCTCAAATAAAATCAACTATGAACCAAATTATGACATAAAGACTGCTAAAGAGAGAATTTATATTACAGCAATGCATGCATACGCATCGATGCAAA
GTCTTAGGTGGTGTTTGGATCTAGGGACTTAACTTTAGTCTCTGTATTTAGACACTAATTTATAGTACTATATATAGACTACTTATAAAACTAATTACAT
AAATGAAAGCTAATTCACGAGACAATTTTTTTAAGCCTAATTAATTCATAATTAGATAATATTTATTGTAGCATCACATAGGCTAATCATGGATTAATTA
GGCTCAATAGATTCGTCTCGCGAATTAGTCCAAGATTATGGATGAGTTTTATTAATAGTCTACGTTTAATATTTATAATTAATTTCCAAACATCCAATGT
GATAGGAAATTAAAAGTTTTAGTCCCATCTAAACAGGGTCTACTCCCTCCGTCCCAAAAAAAGATAAACCCTGGGTTTCCATGTCCAACTTTGACTGTCC
GTCTTATATGAATTTTTTTTATAATTCGTATTTTTATTGTTGTTAGATGATAAAGCATGATTAATGCTTTGTGCGTGACTTGTCTTTTTAATTTATTTTA
TATCTTTTTTAAATAAGACAGACGGTTAAACGTTGGACACGAAAATTAAGGTTTGTCTTTTTTTTTTTTTACGGAGGGAGTAATTAGTAACGCTTTGGAG
TTCCAACCGCGGAGAGGAGAAGATCCATGATGTCTCCATACAACGCCTCTTCCGAAGCGTCGAGAATGTGAAGACGACGACGCCTGGACGCCTGGTGCAT
GTCAGTGCGATTGATAGTCAAAAAACAAATGAAACGAAACTGCGGATACACACCGGATTCTAATCACTATAGAGTAAAAACATGTTAACTAAATGGTTAT
AAATTTTTTTAAAAATATTTGATAAAATAAATTAATATGTAATATACAATTCTACAAACATGCATGTTCAAATTCAACTTCTACAAATATATAACTAATA
TAAATATTCTTATTTTTTCGTTCGTCACCTCATATGTGCGGTGATTTTTTTCATCCCCCTCGCCTCTCCTAAATCTTAGTCGAAATTCCATCACCCCGAC
CAAAAAAACTTCCCAATAAGAATACAATCAATCACACAAATAAAATAAAATCGGAGGAAGCATTATACACACACACACAAATATATCAAAAAAAAAAGAT
CAAAGGGGAGGTCGCCGTCGAG