« Back to Oryza longistaminata search


Detailed information on CNT30110517


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69KN0|EMF2B_ORYSJ, E-value = 2e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696063Oryza longistaminataOryza sativa20.478.2990.38156reverse complement
CNT30102711Oryza longistaminataOryza rufipogon67.4536.1792.02514forward

Expression of CNT30110517

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIFTCFFTCIHIPIGNQEIHLILLFLYFFEALPAHA*

>peptide 2 (43 aa)
LLAEGVDRRHQTFSYCSRFKKRTRVEISSEKIRHVHPHIVDSG*

>peptide 3 (51 aa)
MVKFSIRQSKVSCNVTEWSREKHQKMSSLLHFSSKNLIDFFLLPPFPIDKGL

>peptide 4 (65 aa)
SFWPRELIEDIKHFRTAQDLRSVQGWKSQVRKLGMYIHILWIQDDLKMPKQDLKTIMCRGKMVVL*

Sequence

>CNT30110517
AGCTTCTGGCCGAGGGAGTTGATCGAAGACATCAAACATTTTCGTACTGCTCAAGATTTAAGAAGCGTACAAGGGTGGAAATCTCAAGTGAGAAAATTAG
GCATGTACATCCACATATTGTGGATTCAGGATGACCTGAAGATGCCCAAGCAGGATCTGAAGACGATTATGTGCAGAGGGAAAATGGTAGTTCTGTAGCG
CACGCTTCTGTTGATCCTGCCAAGTCATTACACGGTAGCAATCTCTCAGCACCAACAGTGTTACAGTTTGGGAAGACAGGAAAGCTGTCTGTTGAACGAG
CTGATCCCAGAAATCGCTAGCTCCTACAAAAACGCAAGTTCTTTCATTCTCACAGGGCTCAAGTGGGTGAATCAAAACCGTTCATCTCTCCATCTATCTT
CTGTCTGCATATATTTGTAGCAGAATCAGTGGTGTTGCATTGGTCGACTTCACTGTATGATCTTTACTTGCTTTTTCACTTGCATACATATACCTATTGG
CAATCAGGAAATACACCTCATTTTATTGTTTCTATACTTCTTTGAGGCACTTCCTGCACACGCCTGAGATGAGTAACAATTGGAGTTGATAAAGGGCTAT
ATAGATGGTGAAATTTTCTATACGTCAATCAAAAGTTTCCTGCAATGTCACTGAATGGTCACGAGAGAAACATCAGAAGATGTCCTCCCTACTCCATTTC
TCATCTAAAAACCTAATCGATTTCTTCCTACTACCTCCATTCCCAATTGATAAAGGGTTATG