Detailed information on CNT30695924


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000009, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554854Oryza sativaOryza glaberrima67.3386.0499.181226forward
CNT30349523Oryza sativaEragrostis tef5.5529.8891.09101forward
CNT30596893Oryza sativaOryza meridionalis25.5435.5893.98465forward
CNT30108984Oryza sativaOryza longistaminata43.9978.1595.51801forward
CNT30102711Oryza sativaOryza rufipogon18.7824.0797.66342forward
CNT30577391Oryza sativaOryza barthii18.2923.4293.39333reverse complement
CNT30116366Oryza sativaOryza nivara17.397.5298.1315forward

Expression of CNT30695924

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGRSCYCFKFKAAADQRSPPVSSQMIGWKNKFCISSGGCVSTELT*

>peptide 2 (45 aa)
MLHLPGIPAFSSSTISIQPHGNCARIIIITMKQRKNGAILLLFQV*

>peptide 3 (48 aa)
MALNGSAAKHFQDTIVTLLGGFWNLDEMELDLGEESVLELCQMGQPDQ*

>peptide 4 (48 aa)
LRTTCQAKLFPLLRIFLPSKTTVAKPLSLPCFLISTSQACSLHLSRFM*

>peptide 5 (50 aa)
MQREHWPGTTGIYGLHQPTNRSKAALKIGRKGPMPLKHFKERESQGQYDL*

>peptide 6 (34 aa)
MSSRCSISLESQHFHPLPFQYNHMEIVLESSSSP*

>peptide 7 (36 aa)
MTETRRLRLCHQDAPSPWNPSIFILYHFNTTTWKLC*

>peptide 8 (60 aa)
MTCEEPERAFTSHGYIWIEKRRPNNLLAGNLGLFKGLSELPKQSGAPRGHKTHILVRAVR*

Sequence

>CNT30695924
CTGAGAACCACCTGCCAAGCTAAACTCTTTCCCCTTCTTAGGATTTTCCTTCCCTCCAAAACAACGGTGGCAAAACCTCTCTCCCTCCCCTGTTTCCTGA
TCTCCACCTCTCAAGCTTGCTCACTGCATTTGAGTAGGTTTATGTAGAGGGCTTGGCATTGGGGGATTGATAGCAATAGGCTGCTGTGTATATGCATTAA
AGAGAGCTCACCAGCTCTAGTAAGTGCTATTCAATGCAGAGGGAGCACTGGCCTGGTACAACTGGGATTTATGGACTTCATCAACCAACCAACCGTAGCA
AGGCTGCTCTGAAGATTGGAAGAAAGGGACCTATGCCTCTCAAGCACTTTAAGGAGAGGGAGAGCCAAGGACAATATGACCTGTGAAGAACCAGAAAGAG
CCTTCACATCACACGGTTACATCTGGATCGAAAAGAGACGCCCTAACAACCTACTCGCAGGCAACCTGGGATTATTTAAAGGGCTGTCTGAGCTGCCGAA
GCAGAGTGGTGCACCTAGGGGTCACAAGACTCACATCCTTGTCCGGGCAGTTCGCTGATCGCCGGACGGCTCCTTAATTTTCTCAACAGAAGCCTTTAAT
CTGTATTCAAATGGCTCTAAATGGATCCGCAGCCAAACATTTCCAAGATACAATCGTAACTCTATTGGGTGGATTCTGGAATCTCGATGAAATGGAGTTA
GATCTGGGAGAAGAATCAGTACTGGAACTATGTCAAATGGGGCAACCTGACCAGTGACTAGTGACCACTGCTACGAGCTGGAACCTGTTAAATTTCCATG
CCCATCCATCCATATGATATATTTCCCACTCACCACCAGTTTTTCTGAACCTGATGCAATTATGCAAGTAATCAAGCAATCAACCCACCGGTGAAGATGT
TGGTCAATGACTGAAACTAGGAGGCTAAGGTTATGTCATCAAGATGCTCCATCTCCCTGGAATCCCAGCATTTTCATCCTCTACCATTTCAATACAACCA
CATGGAAATTGTGCTAGAATCATCATCATCACCATGAAACAAAGGAAAAATGGGGCGATCTTGCTACTGTTTCAAGTTTAAGGCGGCGGCAGATCAGCGC
AGTCCTCCTGTCTCTTCACAGATGATTGGCTGGAAAAACAAATTCTGCATCTCATCTGGTGGTTGCGTCTCAACGGAGCTGACGTGATGGTCTGACAAAG
ATGTTTCAAACCATAAATTAGTCACTGACAAAGCCTGCTTCTGTTGTTCGCCGAAATTCTTTTAGAAGACTCAGGCCCTGTTTAGATGGGACTAAAACTT
TTAAGTCCCTATTACATCGGATGTTTGAAAATTAATTATAAATATTAAACGTAGACTATTAATAAAACCCATCCATAATCTTGGACTAATTTGCGAGACG
AATCTAATGAGCCTAATTAATCCATGATTAGCCTATGTGATGCTACAGTAAATATTCTCTAATTATAGATTAATTAGGCTTAAAAAATTTGTCTCGTGAA
TTAGCTTTTATTTATGTAATTAGTTTTGTAAGTAGTCTATATTTAATACTCTAAATTAGTGTCTAAAGACAGGGACTAAAGTTAAGTCCCTGGATCTAAA
CACCACCTCAGTTTGATTACTGAATAGTAGTGATTGATTTTGGTCATTTGGGGCGCCGTCTGCATGTTCCATCCTGCCTACTGGTAAAGATTAGTGATGG
TAATACAAAGGAGTACATATGTTCAATGTTCATAGCAATCCTCTACAATTGTCCTTTCAGATACACAAATTTGAACTGAATGTGATTTTGTGAAATGTGA
AAAGGAGAATGGTGAAAATAC