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Detailed information on CNT30102134

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30553953	Oryza rufipogon	Oryza glaberrima	100.13	91.7	99.5	795	forward
CNT30370421	Oryza rufipogon	Oryza glumipatula	99.87	100	99.75	793	forward
CNT30108006	Oryza rufipogon	Oryza longistaminata	34.38	11.82	92.31	273	forward
CNT30576731	Oryza rufipogon	Oryza barthii	95.09	92.98	99.47	755	forward
CNT30115613	Oryza rufipogon	Oryza nivara	95.09	95.45	100	755	forward

Expression of CNT30102134

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLESWACVPSKRQMRHSWWIPAKNLYLNLQVVGEVVLAL*

>peptide 2 (48 aa)
QNITHLLPLLFFFSFSSSPSRSTQRRCFPGSAVALPCACCHAPLRRPF*

>peptide 3 (58 aa)
TKHNPPSSSSFFFLVLFLSLTLHPAPLLPRQCRRSPLRLLPRPTPATLLAAAPQPSPA*

Sequence

>CNT30102134
ACAAAACATAACCCACCTTCTTCCTCTTCTTTTTTTTTTCTCGTTCTCTTCCTCTCCCTCACGCTCCACCCAGCGCCGCTGCTTCCCAGGCAGTGCCGTC
GCTCTCCCCTGCGCCTGCTGCCACGCCCCACTCCGGCGACCCTTCTAGCCGCCGCCCCGCAACCGTCGCCGGCCTGAATCGGTTTCTTGGCTCCTCGCTT
CTCTGCCCCTAAGCTAATCCCAGCCACCGGTCTCTTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGCGCACGCAACTCCGGTGGCTGCAT
CCCTTTCCCCCATAGATTACCTTGTTTGATGGTCCTACTGTGGCTGTGGAAGACTGATGATCATGTGACTCTCTGGTTCTACAGCTTCTTCTGAAATTGG
AAGAATGCATGCTTGAATCCTGGGCGTGCGTCCCGTCGAAGCGACAGATGAGGCACTCTTGGTGGATACCTGCGAAGAACCTTTACCTGAATTTGCAAGT
CGTGGGGGAGGTGGTTTTGGCGCTGTAAAAACTCCGGACGCAACTGGTCGCTTGCTCGTTGGTGGAGGCGCCCAGAAAGAGATAGGCTCGGGTAGCCTCT
AAGATGGCTTCGCCCGCGGCGTGTGTGTGCTCGCCTTGTTCTTAACCTGTTGATCACCCCCTGCAATTACTTCTCTGCAAGCATAGCAAACTGAAACAAC
TGGTTGACAGTTTTAAATTCCTTATTATCAACTATGTCTTGAATTTCGCACCTCAATTCCGAGTAAAAATGACAAATAGAATCTTCGGTTCCCT