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Detailed information on CNT30553953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005507, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370421Oryza glaberrimaOryza glumipatula91.58100.1399.5794forward
CNT30102134Oryza glaberrimaOryza rufipogon91.7100.1399.5795forward
CNT30576731Oryza glaberrimaOryza barthii93.6610099.75812forward
CNT30115613Oryza glaberrimaOryza nivara91.2310099.62791forward

Expression of CNT30553953

Peptides detected in this lncRNA

>peptide 1 (77 aa)
QPVSKSPTKHNPPSSSSFFFSRSLPLPHAPPSAAASQAVPSLSPAPAATPHSGDPSSRRPATVAGLNRFLGSSLLCP*

>peptide 2 (39 aa)
MLESWACVPSKRQMRHSWWIPAKNLYLNLQVVGEVVLAL*

Sequence

>CNT30553953
GCAGCCCGTAAGCAAAAGCCCAACAAAACATAACCCACCTTCTTCCTCTTCTTTTTTTTTTTCTCGTTCTCTTCCTCTCCCTCACGCTCCACCCAGCGCC
GCTGCTTCCCAGGCAGTGCCGTCGCTCTCCCCTGCGCCTGCTGCCACGCCCCACTCCGGCGACCCTTCTAGCCGCCGCCCCGCAACCGTCGCCGGCCTGA
ATCGGTTTCTTGGCTCCTCGCTTCTCTGCCCCTAAGCTAATCCCAGCCACCGGTCTCTTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGC
GCACGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGATTACCTTGTTTGATGGTCCTACTGTGGTTGTGGAAGACTGATGATCATGTGACTCTCTGGT
TCTACAGCTTCTTCTGAAATTGGAAGAATGCATGCTTGAATCCTGGGCGTGCGTCCCGTCGAAGCGACAGATGAGGCACTCTTGGTGGATACCTGCGAAG
AACCTTTACCTGAATTTGCAAGTCGTGGGGGAGGTGGTTTTGGCGCTGTAAAAACTCCGGATGCAACTGGTCGCTTGCTCGTTGGTGGAGGCGCCCAGAA
AGAGATAGGCTCGGGTAGCCTCTAAGATGGCTTCGCCCGCGGCGTGTGTGTGCTCGCCTTGTTCTTAACCTGTTGATCACCCCCTGCAATTACTTCTCTG
CAAGCATAGCAAACTGAAACAACTGGTTGACAGTTTTAAATTCCTTATTATCAACTATGTCCTGAATTTCGCACCTCAATTCCGAGTAAAAATGACAAAT
AGAATCTTCGGTTCCCTCCACCATTGCTACATCGCGTCAATCCCTTTTGTAGCTCACCATAGTAATC