Detailed information on CNT30108006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554221Oryza longistaminataOryza glaberrima11.2234.6391.89259forward
CNT30370421Oryza longistaminataOryza glumipatula11.2232.6691.89259forward
CNT30102134Oryza longistaminataOryza rufipogon11.2232.6291.89259forward
CNT30576731Oryza longistaminataOryza barthii11.2231.991.89259forward

Expression of CNT30108006

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MQKWIILEFGLRWLSLHLLCPYLVGCKICRLRQHKNSFIATTTKALNM*

>peptide 2 (45 aa)
MSSVCIYKHHVSAQYMRCIRTRFIMNMCIHGCMSVCICMYVCMHAC

>peptide 3 (28 aa)
MHTYKIYNEYVYTWMYVSLYMYVCMYACM

>peptide 4 (39 aa)
MLFCDRSPWGWGQRLIPSSLPPSTPPPGFLFWRRITFLF*

>peptide 5 (38 aa)
MLVLLLLCLLLILVSTIQLLGWNEWFHTELVNLVELNQ*

>peptide 6 (68 aa)
MYTTFFLFSLFLVLLPLPHAPPSAAASQAVPSLSPAPAATPHSGDPSSRRPATVAGLNRFLGSSLLCP*

>peptide 7 (55 aa)
MSKPNRKAHVHHLLPLLSFSRSSSSPSRSTQRRRFPGSAVALPCACCHTPLRRPF*

>peptide 8 (35 aa)
MGAAIDPLLPPSLHPSTWFPFLAPHYFPILVNLYT*

>peptide 9 (32 aa)
MIGGLILRGFTNLQFNGNLVKLEYLVILHSSL*

Sequence

>CNT30108006
GTCCATTGCACTTTTTATTTTTAAAAGAGTAATTATTTTAATTGAAAGAAGTTTTACTTTATTTTTTTAGAAGGATACAACTCAGGACGCACGCTTACAC
ACACCGCACTCACACCACGACGCGCGCGCGCGCGCGGCGAAGTCAGTCCCGGGGAAACGGGGAAAAACCCCTGGTGAGACACGCGAGTTGCGATCCCAGG
GATCGAACCCGCGCGGGCTGCTCGCTCACCTGGCGACGCTAGCCAACCGAGCAACGCTCGGTTCTCAAGTTTTACTTTACTTGAGAGAGATTTATATTCA
ATAGTACACCTATATACAGCCCACATGTCAAAGCCCAACAGAAAAGCCCATGTACACCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTTCTTCCTCTC
CCTCACGCTCCACCCAGCGCCGCCGCTTCCCAGGCAGTGCCGTCGCTCTCCCCTGCGCCTGCTGCCACACCCCACTCCGGCGACCCTTCTAGCCGCCGCC
CCGCAACCGTCGCCGGCCTGAATCGGTTTCTTGGATCCTCGCTTCTCTGCCCATAAACTAACCCCAGCCGCCGGCCGGTCTCCTGCTGCTGCAGCCGCCG
TGGAGATGGCCGGTGGAAACATAGGCAACTCCGGTGGCCGCATCCCTCTCCTCCATAGCTACTCTTCTGGACTCTGGTTCTCCTGATGGAAATCTGATTT
CTCCTCTTTGACCTGAAGCACCACCTGCTCCTCCAGAAACTGAAACCCCTCTCTTCTTGAAGCTCAGGAACTGAACACCCCTACTTCTTCTTCAGATTTG
GTTCATCTCTCTCTTTTCGGAAATGCTGTTCTGCGACCGATCGCCCTGGGGATGGGGGCAGCGATTGATCCCCTCCTCCCTCCCTCCCTCCACCCCTCCA
CCTGGTTTCCTTTTTTGGCGCCGCATTACTTTCCTATTTTAGTAAATTTATACACCTAAAATTTATACACCTCAAGTTTACACATCTAAAGTTTAGAGAC
CAAAAGTTTATAAGTCAAAAGTTTATATATCTGATTCAAATTTGAATTTGAATTCAAATATTTTTTTATATATAGTATTTCTATACATCTAAAGTTTATA
GACCCAAAGTTTATAAGTCAAAAGTTTACATACCCGATTCATATTTGAATTTGAATTCAAATTTTTTATATATAGTATTTCTATATATAAATTTTTCTAA
CTTTTGTTTTTTTTAAAAAAAAATTGTGTGGTGTACTGTAGTAGAAAGAAAAGAAGGGGAGGAGGAAGGGAGAGAAGAGGGAGGAGTATAGGGGGAGGGG
GGCAAACCGATCACTGGGCGATCGCCCTGGCCTCCCCCCTCTCTTTCTCTCTACCAAGTTGCTTTACTGTGGATACTATGGTTGAGCTGTGGTGTTGTTG
AGGTGTACAATTTCTGGTTGAATATCTCTTTTTTTTCCCTAACCTCTACTGATTTCTAGTCAAGACTATCTTACTCCTGTTGAGATTCTACTGCTTGTAC
TGTTGTTCCTCATAGCTGCTACTCACCCCTAATGTTGCTGCCACTATGGCGATCTGCCGCTGCTGCTGCTGCTCTTTGCAGTAGAAAATGTTAGTACTAC
TACTGCTGTGCCTACTGCTGATCTTGGTATCTACGATACAGTTGCTTGGTTGGAATGAATGGTTTCACACTGAACTAGTTAACTTGGTGGAACTTAACCA
GTGACTCACCTACTTGTTGTTTGGTGGCTGCTTCCTAGCTTGATTGACACCTCACCATGACATGATCGGTGGATTAATTTTGAGAGGTTTCACTAATTTA
CAATTTAATGGAAATCTGGTGAAATTGGAATACTTAGTAATTTTGCATTCTAGTCTATAAGCTTTTGGAATTTTGGAGGTTACTCTAGAGTTAAGGGACC
GATTAATAATTGCCCTAGAATTCAGGGAGTTGTATGCAAAAATGGATAATTTTGGAATTTGGCTTGAGATGGCTCAGTTTACATCTTTTGTGCCCCTATT
TGGTTGGATGCAAAATTTGTAGATTGAGACAACACAAAAATTCCTTTATTGCTACTACTACTAAAGCTTTAAATATGTAACCTCCTAAATAGAAATTGTG
CGGTCGAAAATCACACAAACATTTCGTAATTAATACATTAATTTCTTCTTTTAACTTGAATGCAAAGCATATGAGTTCAGTTTGTATTTATAAGCACCAT
GTATCTGCACAATATATGAGATGCATACGTACAAGATTTATAATGAATATGTGTATACATGGATGTATGTCAGTCTGTATATGTATGTATGTATGTATGC
ATGCATGCA