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Detailed information on CNT30115613

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005507, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30553953	Oryza nivara	Oryza glaberrima	100	91.23	99.62	791	forward
CNT30370421	Oryza nivara	Oryza glumipatula	95.45	95.21	99.74	755	forward
CNT30102134	Oryza nivara	Oryza rufipogon	95.45	95.09	100	755	forward
CNT30576731	Oryza nivara	Oryza barthii	95.7	93.23	99.47	757	forward

Expression of CNT30115613

Peptides detected in this lncRNA

>peptide 1 (56 aa)
ITHLLPLLFFFLVLFLSLTLHPAPLLPRQCRRSPLRLLPRPTPATLLAAAPQPSPA*

>peptide 2 (39 aa)
MLESWACVPSKRQMRHSWWIPAKNLYLNLQVVGEVVLAL*

>peptide 3 (68 aa)
HNPPSSSSFFFSRSLPLPHAPPSAAASQAVPSLSPAPAATPHSGDPSSRRPATVAGLNRFLGSSLLCP*

Sequence

>CNT30115613
CATAACCCACCTTCTTCCTCTTCTTTTTTTTTTTCTCGTTCTCTTCCTCTCCCTCACGCTCCACCCAGCGCCGCTGCTTCCCAGGCAGTGCCGTCGCTCT
CCCCTGCGCCTGCTGCCACGCCCCACTCCGGCGACCCTTCTAGCCGCCGCCCCGCAACCGTCGCCGGCCTGAATCGGTTTCTTGGCTCCTCGCTTCTCTG
CCCCTAAGCTAATCCCAGCCACCGGTCTCTTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGCGCACGCAACTCCGGTGGCTGCATCCCTT
TCCCCCATAGATTACCTTGTTTGATGGTCCTACTGTGGCTGTGGAAGACTGATGATCATGTGACTCTCTGGTTCTACAGCTTCTTCTGAAATTGGAAGAA
TGCATGCTTGAATCCTGGGCGTGCGTCCCGTCGAAGCGACAGATGAGGCACTCTTGGTGGATACCTGCGAAGAACCTTTACCTGAATTTGCAAGTCGTGG
GGGAGGTGGTTTTGGCGCTGTAAAAACTCCGGACGCAACTGGTCGCTTGCTCGTTGGTGGAGGCGCCCAGAAAGAGATAGGCTCGGGTAGCCTCTAAGAT
GGCTTCGCCCGCGGCGTGTGTGTGCTCGCCTTGTTCTTAACCTGTTGATCACCCCCTGCAATTACTTCTCTGCAAGCATAGCAAACTGAAACAACTGGTT
GACAGTTTTAAATTCCTTATTATCAACTATGTCTTGAATTTCGCACCTCAATTCCGAGTAAAAATGACAAATAGAATCTTCGGTTCCCTCC