Detailed information on CNT3099550


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003619, E-value = 7e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696096Oryza rufipogonOryza sativa32.5124.9694.15171reverse complement
CNT30555221Oryza rufipogonOryza glaberrima34.228.7892.78180reverse complement
CNT30596927Oryza rufipogonOryza meridionalis61.98100.3191.41326reverse complement
CNT30109442Oryza rufipogonOryza longistaminata19.7738.194.23104reverse complement
CNT30116582Oryza rufipogonOryza nivara92.5979.5890.55487forward

Expression of CNT3099550

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MTCLALQLEEPRRLSRSTPERRKNRNLGDIQSKQYKQAIRLLKQRTKPFLMDSTHFS*

Sequence

>CNT3099550
TGTGATTTATTTTAATTAACCAACACCAAAGCGGTGGCACTAATCCAACAATACCATTAGAACCAACAGTCTAAACATTAACAGGATTTTCCCCATTATA
TACTAGTTGAACTAAGCATGGCTAAGCAACTCCTAGTCCAACGTCTATTCATGTTATAACCCAAGCTAACAAAGGAGCAAGGTACCAAAATAGCATGGCT
GTAACAATAGGTAAACATCCCATAATAACATTATAAAACGATGCAGTATTTGAAGAAAAACAATAGAGCATTTGTAATATAGGATCAACATGTTCAAGTG
ACAGGTATGACTTGCCTTGCTCTGCAGCTGGAGGAACCTCGGCGACTATCTCGAAGTACACCGGAGCGTCGGAAGAACCGGAATCTAGGCGACATACAAA
GCAAACAATACAAACAGGCTATAAGACTACTGAAACAGAGAACAAAACCATTTTTAATGGATTCTACGCATTTTTCTTGATTTACTCGGATGAATTAGTT
ATGAATTTTAGAAGATTCACTTTGTT