Detailed information on CNT30596927


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003355, E-value = 5e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696096Oryza meridionalisOryza sativa43.6920.7392.25142forward
CNT30555221Oryza meridionalisOryza glaberrima47.087.4788.24153forward
CNT30109442Oryza meridionalisOryza longistaminata17.5420.8896.4957forward
CNT3099550Oryza meridionalisOryza rufipogon100.3161.9891.41326reverse complement
CNT30115475Oryza meridionalisOryza nivara74.1536.4690.46241forward

Expression of CNT30596927

Peptides detected in this lncRNA

>peptide 1 (53 aa)
KNGFVLCFSSLIACLQCLLWFAARFRSLRRSGVLRDSRRGSSSSRARQVMLVT*

>peptide 2 (40 aa)
MLYCFLSNIALFYNVTMGWLPFVTARLFGYHAPLLAWVIT*

>peptide 3 (41 aa)
MLILYCKCSIVFFQILHCFIMLLWDGYLLLQPGFLDTMLLC*

Sequence

>CNT30596927
TTAAAAATGGTTTTGTTCTCTGTTTCAGTAGTCTTATAGCCTGTTTGCAATGTTTGCTTTGGTTTGCCGCTAGATTCCGATCCCTCCGACGCTCCGGTGT
ACTTCGAGATAGTCGCCGAGGTTCCTCCAGCAGCAGAGCAAGGCAAGTCATGCTTGTCACTTGAACATGTTGATCCTATATTGCAAATGCTCTATTGTTT
TCTTTCAAATATTGCATTGTTTTATAATGTTACTATGGGATGGTTACCTTTTGTTACAGCCAGGCTTTTTGGATACCATGCTCCTTTGTTAGCTTGGGTT
ATAACATGAGTAGAGTTTGGACTAG