CANTATAdb - search

Detailed information on CNT30116582

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000025, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30555221	Oryza nivara	Oryza glaberrima	38.89	11.62	90.34	238	reverse complement
CNT3099550	Oryza nivara	Oryza rufipogon	79.58	92.59	90.55	487	forward
CNT30577678	Oryza nivara	Oryza barthii	27.29	32.94	89.22	167	reverse complement

Expression of CNT30116582

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSKQSLVLTLIMLEPQVDKETRYNNSMAMTIGKHPIVTL*

>peptide 2 (57 aa)
MTCLALLQEEPRRLFQSTLERQESRNLSNIQSKQYKQAIRLVKQRTKPFLMDSMHFS*

Sequence

>CNT30116582
CCGCGAACCGGTCCTTAACTACCATGGGTGCGACCAGCAAAACCATGCACCCACAGTCCACCATGTGATTTATTTTAATTAACCAACACCAAAGCGGTGT
CACTAATCCAACAAAACCATTAGAACCAACAGTCTAAACATTAATAGGATTTTCCCCAATGTGAACTAGTTGAACTAAGCATGTCTAAGCAATCCCTAGT
CCTAACTCTAATCATGTTAGAACCCCAAGTTGACAAAGAAACAAGGTACAACAATAGCATGGCTATGACAATAGGTAAACATCCCATAGTAACATTATAA
AACAATGCAGTATTTAAAGGAAAACAATAGAGCATTTGCAATATAGGATCAACATGTTCAAGTGACAAGCATGACTTGCCTTGCTCTGTTGCAGGAGGAA
CCTCGGCGACTATTTCAAAGTACACTGGAGCGACAAGAGAGCCGGAATCTAAGCAACATACAAAGCAAACAATACAAACAGGCTATAAGACTAGTGAAAC
AGAGAACAAAACCATTTTTAATGGATTCTATGCATTTTTCTTGATTTACTGAGACTTGAATGGGCTTAAACGGAGCTCGGATGAATTAGATATGTATTTT
AGAAGATTCACT