CANTATAdb - search

Detailed information on CNT30555221

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006915, E-value = 9e-113

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596927	Oryza glaberrima	Oryza meridionalis	7.47	47.08	88.24	153	forward
CNT30110912	Oryza glaberrima	Oryza longistaminata	7.96	65.46	94.48	163	reverse complement
CNT3099550	Oryza glaberrima	Oryza rufipogon	8.78	34.22	92.78	180	reverse complement
CNT30116582	Oryza glaberrima	Oryza nivara	11.62	38.89	90.34	238	reverse complement

Expression of CNT30555221

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MWSCLYISILCHDKKYCPALDVCFYALVDSISNYCNQCS*

>peptide 2 (80 aa)
ICSVFSIYDIGVINEFLVLFFIRIDFIHRIILIKTILNFFQPTLDCSSTTLLSTFYYVEIEICFEWILSRILLCRNRNMF*

>peptide 3 (84 aa)
MYLRKKLHNTILHICSRFHFCFKFAGPTACACNRVHVRTYEQVDQGFLQRFFESLFRDLKQFTVMWIEYACLSACLKLDLRPFT*

Sequence

>CNT30555221
ATATGTTCTGTTTTTTCTATATATGACATTGGTGTTATAAATGAGTTTCTTGTCCTTTTTTTTATAAGGATTGACTTTATCCATAGAATAATTCTAATTA
AAACAATACTAAATTTCTTCCAACCAACCCTAGATTGTTCGAGCACCACATTATTATCTACATTTTATTATGTAGAAATAGAAATATGTTTTGAGTGGAT
ATTGAGTCGCATTTTATTATGTAGAAATAGAAATATGTTTTGAGTGGATATTGAGTCGGTTTGTTAGAGATTTGGCAAGAGACTGCCTATGTGGTCTTGT
TTGTATATTAGTATATTATGCCATGACAAGAAGTACTGCCCTGCCCTTGATGTATGCTTCTATGCTCTAGTTGATTCAATATCTAATTACTGCAATCAGT
GCAGCTAATGTATTTGCGGAAAAAACTCCATAATACAATACTCCACATTTGTTCTAGATTTCATTTTTGTTTCAAGTTTGCTGGTCCTACTGCATGTGCA
TGTAATAGAGTGCATGTAAGAACATACGAACAAGTAGACCAAGGATTTTTGCAACGTTTCTTTGAGAGTTTATTTAGGGACCTGAAACAATTTACTGTTA
TGTGGATTGAATATGCTTGCTTGTCAGCTTGTTTGAAGCTCGATTTGAGACCTTTTACTTAAGAATATCTTGATAAGCAGTATAATTAGAGATGTAATTT
TTGGGGCGTATGGAATGAGATGGTTCACTGTTTGCATATTTCTGAAAGCACTATATTGATACATACTATATCTATTGTATATATGTTTGGATTTGATATG
TTTTAAGATTTTTTAAGTGAGCACTTATGTTTTTATACGGCACATGTCCCATTTAAGTAAACTCATACAATGACAGTGTGGTTATGCATAAGTTACATGT
AAACAAAAACATTTTGTTCAGGACAAGCAGCAGCTATTAATTAATCGAAAGGCACAAAACTTGAGAAATGAAATGTTTGATTTAAAAGGTTTTACCTGGT
CAAATAATCTGTCAAGCAAATCCAGATGATGTCGACACCTCAAATTGTAATCCTGAGAATCTCTCGATCTCTGCATAATAAATACTCATAAGAGAATAGT
AAATGTTTGTTTGTAAAGAATTTAAACAAAAGTGAAAGTAATATTACCATTTTAGCCCACAATTTTCTGGTGTTTCTGATCTTTTCTTTTATATTCTTGA
CACCATAAGTTGATCTTTTCTTTTATATTCTTGACACCGTAGGTTGCACCCTGATCACACATCTTCTGTTGGATCAACCGATAAGACTCTTCCGACAGCT
CCCCAGAAGCCTCGACTTCTTCCTCACAATACTGATATAACATAATTGTGTCATCATCGCTCCACGTGACCCTGGGAAACTAAGAACGCCTAAGACTTAG
GGGGAGAATGATGGAATAAGTCTTGTGGCGCGGAGGGGCCGAATCTCGTGCGGGCGAGGCTGTCGGTGACGGAGGTGTCCACCATCTCAGGCTTCTTGGT
ACTGCAAAGTGAAACATTTGATGAATTAAGATTTATCTGAGTTTATGCCAAACATCAGTTTCCCTATCGGAAGAAACTATCGGAAGAAGAAAAAAAAGCA
CAATTTCACAACCTATTAGTATGGTTGACTCATGTCGAGAGGAAAAAAATTACAGTTAATGAGAAGTTAATTGATCACATAAATTTGAATTGTGCCCTTG
AGCCACTGCCATGTGGGGCCCGCATTTCGGCGCCGCCCCTTCTCTCTCTAGGGTAATAATGGCGCAATAAATCAATTAAGGACTTCTCTATTTATAGTAA
AAACACTGTGGATCTTCTAAAATTCATAGAAAATTCATCCGAGCTCTGTTTAAGCCCATTCAAGTCTCAGTAAATTAAGAAAAATGCAAAGAATCCATTA
AAAATGGTTTTGTTCTCTGTTTTAGTAGTCTTATAGCCTTTTTGTACTGTTTGCTTTGTATGTCGCTTAGATTCCGGCTCTCCCGACGCTCCGGTGTACT
TTGAGATAGTCGCCAAGGTCCCTCCAGCTGCAAAGCAAGGCAAGTCATG