Detailed information on CNT30696096


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003355, E-value = 3e-144

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552962Oryza sativaOryza glaberrima55.4789.4193.68380forward
CNT30596927Oryza sativaOryza meridionalis20.7343.6992.25142forward
CNT30109442Oryza sativaOryza longistaminata40100.3790.15274forward
CNT3099550Oryza sativaOryza rufipogon24.9632.5194.15171reverse complement

Expression of CNT30696096

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKVSPRSRLRPCRRGCLWSGVPAAVLVKA*

>peptide 2 (31 aa)
MPVEWCSCCSFSQGLAPVVFLFFRCIYVRLL*

>peptide 3 (37 aa)
MFALYVARFRLSRRSGVLRDSRRGSSSSRARVRVRVR*

>peptide 4 (39 aa)
MSLDSGSPDAPVYFEIVAEVPPAAEQEFEFGSDEGFSEE*

>peptide 5 (51 aa)
DPPWTALPESLPCGSRLPAPLPPSPEPLTGGARLPAPRPALMTSALEYIAQ*

>peptide 6 (60 aa)
RSAVDRPPRVTAMRVPLAGAPSSLSRAADRWGPLAGAAPRLDDVSPGIYCAINDLRFFLV*

Sequence

>CNT30696096
CGATCCGCCGTGGACCGCCCTCCCCGAGTCACTGCCATGCGGGTCCCGCTTGCCGGCGCCCCTTCCTCCCTCTCCCGAGCCGCTGACCGGTGGGGCCCGC
TTGCCGGCGCCGCGCCCCGCCTTGATGACGTCAGCCCTGGAATATATTGCGCAATAAATGATTTAAGGTTTTTTCTTGTATAGTAATAAACACAGTGAAT
CTTCTAAAATTCATAACTAATTCATCCGAGCTCCGTTTAAGCCCATTCAAGTCTCAGTAAATCAAGAAAAATGTGTAGAATCCATTAAAAATGGTTTTGT
TTCCTGTTTCAGTAGTCTTATAGCCTGTTTGCAATGTTTGCCTTGTATGTCGCTAGATTCCGGCTCTCCCGACGCTCCGGTGTACTTCGAGATAGTCGCC
GAGGTTCCTCCAGCAGCAGAGCAAGAGTTCGAGTTCGGGTCAGATGAAGGTTTCTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTGGAGT
GGTGTTCCTGCTGCAGTTTTAGTCAAGGCTTAGCTCCTGTTGTCTTTCTTTTCTTCCGCTGCATTTATGTAAGACTTTTATGATGTTTGTAAGACGTGGA
TCTGAATGTCAACATTGTCGTTTGTGTACCCAGGCTGGTCCTGGACGGGGAATTTAATGCACATTCTGCTTGAAATTCTATTCGG