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Detailed information on CNT3093534


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06GR1|PSAB_PIPCE, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30219816Solanum tuberosumHordeum vulgare21.184.3290.786forward
CNT301761Solanum tuberosumZea mays37.192.6686.75151forward
CNT30682212Solanum tuberosumTriticum urartu21.182.6191.8686forward
CNT30368556Solanum tuberosumSorghum bicolor37.1930.3886.09151forward
CNT30103614Solanum tuberosumOryza rufipogon21.1812.4189.5386forward
CNT30585620Solanum tuberosumEchinochloa crusgalli21.181.6890.786forward

Expression of CNT3093534

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPCPSQKNYAKESWQMVLQPRFGIFEPENIVS*

>peptide 2 (47 aa)
MKHENLLPLLYIVPKNYYLLMYIVAYLGEAVIHLRNYSTERTPLWMQ*

Sequence

>CNT3093534
GCTTTGGGTACTGGATTTACAGAATTTACTCAATGAGTATTTCAAAGGCAGCATACCTCACATTCTCTGTAACAAATGAAGCATGAAAATTTATTACCTC
TGCTGTACATAGTTCCGAAAAATTATTACCTTCTGATGTACATAGTTGCGTACCTTGGGGAAGCAGTAATACATCTAAGAAATTATTCCACCGAACGTAC
TCCCCTCTGGATGCAGTAAAAGCAACATGGACTAAATGCCCTGTCCAAGCCAAAAAAACTACGCCAAAGAGTCCTGGCAAATGGTGCTTCAGCCGAGATT
TGGCATTTTTGAACCAGAAAACATTGTTTCTTAGTTGTACCGTATTCTCAATGGGTCATTTTGAAATGTGATTCCAATTGACATTTACAAACCCTGTAGT
CCCTGC