Detailed information on CNT30103614


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH5|PSAB_ORYNI, E-value = 2e-165

BLAST vs NONCODE:
NONBRAT005487, E-value = 3e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678161Oryza rufipogonSetaria viridis27.1350.8184.57188reverse complement
CNT30201934Oryza rufipogonPisum sativum99.4242.1787.08689forward
CNT30712408Oryza rufipogonGlycine max37.6694.5785.06261forward
CNT3093534Oryza rufipogonSolanum tuberosum21.7937.1984.77151forward
CNT30194074Oryza rufipogonSecale cereale65.3747.1996.47453forward
CNT30219816Oryza rufipogonHordeum vulgare10034.7795.96693forward
CNT301761Oryza rufipogonZea mays10012.2396.54693forward
CNT30683954Oryza rufipogonTriticum urartu10024.896.83693forward
CNT30368556Oryza rufipogonSorghum bicolor70.2797.9995.48487forward
CNT30152144Oryza rufipogonPrunus persica6.6421.691.346forward
CNT30430934Oryza rufipogonPapaver somniferum85.439.0690.2592forward
CNT3054267Oryza rufipogonAmborella trichopoda67.162.6787.31465forward
CNT30585620Oryza rufipogonEchinochloa crusgalli10013.5196.97693forward
CNT30117327Oryza rufipogonOryza nivara24.6879.1795.32171forward

Expression of CNT30103614

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MIQNFLAKRHETDFRTSIERLLLIAQSEKQKCSDKDVPQ*

>peptide 2 (47 aa)
YQINDYSNRGFGHKDSTDPSEGVPTPVDRVIHLRNYSIERTLPWMLE*

Sequence

>CNT30103614
TACCAAATAAATGATTACTCGAATCGGGGTTTTGGGCATAAAGATTCCACTGACCCGTCAGAAGGGGTCCCAACCCCTGTGGATAGGGTAATACATCTAA
GAAATTATTCCATCGAACGTACTCTCCCCTGGATGCTGGAATAGCGACATGAACTAAATGTCCTGTCCAAGCCAAAGAACTTACCCCGAAAAGTCCTGAC
AAATGATGATTGAGACGAGATTCCGCGTTTTTGAACCACGAAAGGCTTGGTTTCCATTTGGGTTGTAGATGTAACCAACCCCCTATTAAGGATAGGGTAG
AAAGAAATAATAGAAAAAGAGCTCCTGTATAAAGATCTTCATTGGTCCGTAATCCAATTGTATACCACCACTGATAAACCCCAGAATAGGCGATATTCAC
TGGACCGGCGGCGCCTCCTCGAGTAAAGGCTTCCACAGCGGGTTGACCAAAATGAGGATCCCAAATCGCATGAGCAATAGGTCTTACGTGTAAAGGATCC
TGTATCCATGATTCAAAATTTCCTTGCCAAGCGACATGAAACAGATTTCCGGACGTCCATAGAAAGATTATTGCTAATTGCCCAAAGTGAGAAGCAAAAA
TGTTCTGATAAAGACGTTCCTCAGTAATATCATCATGACTTTCGAAATCATGTGCGGTAGCAATACCAAACCAAATACGACGAGTAGTGGGGT