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Detailed information on CNT30219816


BLAST search results

BLAST vs Swiss-Prot:
sp|P58386|PSAB_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678161Hordeum vulgareSetaria viridis9.3850.5485.56187reverse complement
CNT30202037Hordeum vulgarePisum sativum92.9356.9187.11852forward
CNT30712408Hordeum vulgareGlycine max13.194.5784.29261forward
CNT3093534Hordeum vulgareSolanum tuberosum7.5837.1984.77151forward
CNT30194074Hordeum vulgareSecale cereale48.1710098.44960forward
CNT30289362Hordeum vulgareTriticum aestivum28.1549.8298.22561forward
CNT3059930Hordeum vulgareArabidopsis lyrata10.6463.6691.51212forward
CNT301761Hordeum vulgareZea mays92.1732.4195.591837forward
CNT30682212Hordeum vulgareTriticum urartu100.1560.5698.151996forward
CNT30365705Hordeum vulgareSorghum bicolor23.7389.0895.35473forward
CNT30369364Hordeum vulgareOryza glumipatula4.4221.1596.5988forward
CNT30430934Hordeum vulgarePapaver somniferum58.5517.8690.41167forward
CNT3057356Hordeum vulgareAmborella trichopoda60.7650.3385.711211forward
CNT30147977Hordeum vulgareBrachypodium distachyon31.4651.1896.01627forward
CNT30103614Hordeum vulgareOryza rufipogon34.7710095.96693forward
CNT30585620Hordeum vulgareEchinochloa crusgalli100.138.8895.741995forward
CNT30496729Hordeum vulgareDigitaria exilis40.2478.8695.26802forward

Expression of CNT30219816

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSRLYPLGKYRFDQDLLFWSTKSKHDVVMNIKAQGMES*

>peptide 2 (39 aa)
MIPNFLAKLHETDFRTSIERLLLIAQSEKQKCSDKDVLQ*

>peptide 3 (31 aa)
MVPQTSDCIFQLKWKMTTEIALYIENKPKKT*

>peptide 4 (34 aa)
MSYHPLITYGTPNIRLHFPTEMENDYRNCIVHRE*

>peptide 5 (29 aa)
MTCDACAHKKSRSHPLIVMELCAKFPPVI*

Sequence

>CNT30219816
GCATTGAAAGAGGGGCCATTCGTTGACGATAAGAGTATATCCAACCCATATGTCGTCTTGCCATGAGCAGATTGTATCCATTGGGCAAATATAGGTTCGA
TCAAGATTTGCTTTTCTGGAGTACCAAAAGCAAGCATGACGTCGTTATGAACATAAAGGCCCAAGGTATGGAATCCTAGAAAGAGGCTAGCCCAACTTAA
ATGAGATATGATAGCTTCTTTATGGTCTAACATTCTTGCCAATACATTATCCTCATTCTGTTCCGGATTGTAATCCCTAATGAAAAAAATTGCTCCATGA
GCAAAAGCCCCTGTCATGATGAACCCCGCAATATATTGGTGATGAGTGTATAAAGCAGCTTGAGTAGTAAAGTCTTGTGCTATGAATGCATAAGGAGGTA
AAGAGTACATATGTTGAGCTACTAAGGAAGTAATAACCCCTAAAGAAGCTAGAGCAAGACCTAACTGAAAATGAATCAAATTGTTGATTGTGTCATAAAG
GCCCTTATGCCCATGCCCTAATCGACCCCCCGGAGAAGTATGCGCTTCTAAAAGATCTTTAATACTGTGCCCAATTCCGAAGTTAGTTCGATACATGTGA
CTGACAATGAGAAAAATAAATGCAATAGCTAAATGATGGTGAGCCATATCAGTCAGCCACAAACTTTGTGTTTGTGGATGGAATCCCCCAAGAAGAGTTA
GAATGGTAGTTCCCGCTCCTTGAGCGGTACCAAATAAATGATTACTCGAATCAGGGTTTTGGGCATAAAGATTCCACTGACCCGTCAAAAGGGGTCCCAA
CCCCTGGGGATAGGGTAATACATCTAATAAATTATTCCATCGAACGTACTCCCCCTGGATGCGGGAATAGCAACATGAACTAAATGTCCTGTCCAAGCCA
AAGAACTTACCACGAAAAGTCCTGACAAATGATGATTGAGACGAGATTCCGCGTTTTTGAACCACGAAAGGCTTGGTTTCCATTTGGGTTGTAGATGTAA
CCAACCCGCTATTAAGGACAGCGCAGAAAGAAATAATAGAAAAAGATCTCCAGTATAAAGATCTTCATTGGTGCGTAATCCTATTGTATACCACCACTGA
TAAACTCCAGAATAAGCAATATTCACTGGACCAGCAGCACCTCCTCGAGTAAAGGCTTCCACAGCGGGTTGACCAAAATGAGGATCCCAAATCGCATGAG
CAATAGGTCTTACGTGTAAAGGATCCTGTGTACATGATTCCAAATTTCCTTGCCAAGTTACATGAAACAGATTTCCGGACGTCCATAGAAAGATTATTGC
TAATTGCCCAAAGTGAGAAGCAAAAATGTTCTGATAAAGACGTTCTTCAGTAATATCATCATGACTTTCGAAATCATGTGCGGTAGCAATACCAAACCAA
ATACGACGAGTAGTGGGGTCCTGAGCTAAGCCTTGGCTAAACCTGGGAAATCGTAATTCCATAATGCCTTTCAAATCCTCCTAGCCACTATCCTACTGCA
ATAATTCTCGCTAAGAAGAATGCCCATGTCATGGCAATTCCACCCAGAAGGTAATGGGTTACTCCTACATCACGTCCTTGTATAATGCTCAAGGCTCTAG
GCTGAGTAGCAGGAGCAACTTTTAATTTGTTATGAGCCCAAACGATAGATTCAATGAGTTCTTGCCAATAACCACGGCCGCTGAATAAAAACATTAAACT
GAAGGCCCAGACAAAATGAGCACCTAAGAAAAAATACCATATGCAGATAATGAAGAACCATAAGACTGAATGACTTGCGATGCCTGTGCCCACAAGAAAT
CTCGAAGCCACCCATTAATCGTAATGGAACTCTGTGCAAAGTTTCCCCCTGTAATATGAGTTACCACCCCTTGATCACTTATGGTACCCCAAACATCCGA
CTGCATTTTCCAACTGAAATGGAAAATGACTACCGAAATTGCATTGTACATCGAGAATAAACCTAAGAAAACATGATCCCAGGCAGATACTTG