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Detailed information on CNT3092178


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 9e-109

BLAST vs NONCODE:
NONSTUT001352, E-value = 2e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269327Solanum tuberosumChenopodium quinoa50.552.2386.21457forward
CNT30609983Solanum tuberosumGossypium raimondii52.0458.5186.62471forward
CNT30359114Solanum tuberosumLactuca sativa55.889.0785.35505forward
CNT30646148Solanum tuberosumCannabis sativa27.1860.2986.18246forward

Expression of CNT3092178

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MDQTWVAQVVKSTLTENLGSSLEPYSFAKLDTVTGQKLRENTSKSTKHGPSAVDHLKLTVLSECFRVS*

>peptide 2 (87 aa)
MAHLQWITSSSRFLANVSGSAESPAVSPSVVTRKLTSQVAWGFTREWAQVLNTVRTIPWATRGGRLGLGNTLPHGNSPISGDFRRRW*

>peptide 3 (36 aa)
MVILPFPVISEEDGESFTALPAKVEEERAMDEAAMI*

>peptide 4 (37 aa)
MGQSYHQGKVGQQPHQEVHQQYGNPQRLPSTQLGKPR*

Sequence

>CNT3092178
TATATGAAAAGATTAACTTGTTCTTCATTAATTAATCCAAACCAATTTACACCACATTACAATAATCTTGTACTGAACCCATAACCCAGAATGCTTTTAA
AAAACTGACCCCTTCTATAGATTCATCTCTCACAAAGCTAAAAACTCATAATCTCCACTAACTGGAGATTAGAGATCAACATTTTGTTAAGCTCACTTTC
CGGGAACAAAGTTTGTGGCAAAGGCCCAAGCGTTGTTGTTAACTGGGTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGGTCAACAAC
CTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAGATAGCCAAGATGCTTTGTGCATGGACCAAA
CTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAAATTTGGGATCCAGCCTTGAACCATACAGCTTCGCCAAACTTGACACCGTTACGGGCCAAAA
GCTCAGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAGTGGATCACCTCAAGCTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAG
TCCAGCAGTGTCCCCATCCGTAGTCACCAGGAAACTCACCAGTCAAGTAGCTTGGGGCTTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACC
ATACCATGGGCTACCAGAGGAGGCAGGCTTGGCCTTGGCAACACTCTTCCTCATGGTAATTCTCCCATTTCCGGTGATTTCAGAAGAAGATGGTGAGAGT
TTTACCGCCTTACCGGCGAAAGTAGAGGAAGAAAGAGCCATGGATGAAGCAGCCATGATTTAATATTAATAAAAAGAAATGAAGTGTATTTTGATGGTTG
TTGTG