Detailed information on CNT3086108


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673491Vigna radiataSetaria viridis18.3925.6685.41185forward
CNT30662024Vigna radiataTriticum dicoccoides10.7421.2685.19108forward
CNT30626924Vigna radiataDaucus carota20.7816.5783.25209forward
CNT30367875Vigna radiataSorghum bicolor18.3922.3786.49185forward
CNT3055148Vigna radiataAmborella trichopoda20.085.4285.15202forward

Expression of CNT3086108

Peptides detected in this lncRNA

>peptide 1 (32 aa)
NLAIWILLKAGVKDSIGDLVAELVWVSRTIFS*

>peptide 2 (34 aa)
MKLVPEGDINSQKVVIRMPQIQTEKLKTRVPFSN*

>peptide 3 (33 aa)
MRNKEKELQKSNYDYKIRQTPHHKAISQHKVNV*

>peptide 4 (40 aa)
ATLLSGSCSRQASRTASEIWSQSLSGCHARSSRSQCWPWW*

>peptide 5 (38 aa)
MSHKQPCYLDLAQGRRQXQHRRFGRRACLGVPRSPTRR*

>peptide 6 (99 aa)
QPCYLDLAQGRRQGQHRRFGRRACLGVTHDLLVVNVGLGGDFSEDHDQVGFGACLTSNLAIWILLKAGVKXSIGDLVAELVWVSLVHRLGGKQKCLCHL*

>peptide 7 (70 aa)
MLALVVISPKTMTRLVLVHVSQATLLSGSCSRQASXTASEIWSQSLSGCPSFTDSEVNRNVSAIFKLLNL*

Sequence

>CNT3086108
GCAACCTTGCTATCTGGATCTTGCTCAAGGCAGGCGTCAAGGACAGCATCGGAGATTTGGTCGCAGAGCTTGTCTGGGTGTCACGCACGATCTTCTCGTA
GTCAATGTTGGCCTTGGTGGTGATTTCTCCGAAGACCATGACCAGGTTGGTTTTGGTGCATGTCTCACAAGCAACCTTGCTATCTGGATCTTGCTCAAGG
CAGGCGTCAAGNACAGCATCGGAGATTTGGTCGCAGAGCTTGTCTGGGTGTCCCTCGTTCACCGACTCGGAGGTAAACAGAAATGTCTCTGCCATCTTTA
AACTTTTGAACCTGTAAACACACACATACGAAAAATGAAATTAGTACCTGAAGGGGATATAAATTCGCAAAAGGTTGTTATACGCATGCCTCAAATTCAG
ACAGAAAAACTGAAAACAAGAGTGCCATTTTCTAACTAAACAGAGGCCGTTGGGTTTAAGGGAAGGGGCCAATTCCTTCCTCAGAGTCAGAATCCCTATC
AGGAAAGATGCCCATATATGGTGACCCACTCAGACTAAATTGATTCCTCCTAAGGAATATATGAGAAACAAGGAAAAAGAACTACAAAAAAGCAATTACG
ATTACAAAATTCGCCAAACCCCCCATCACAAAGCCATATCTCAGCACAAGGTCAATGTTTGATTGTAAGCTCAAAATCCCCAAAAATGATGTTTTTTTTT
TCATAGCTTAAATGTAAAAAAGAAAAAAAAAAAGCCATTTGTATAGATTTAGATTAGATTTGAAAGGCTAACGCGTTCCCGCAGCAAATAAAGAAACAAA
GTTTGGGGAAGCATAATCCTAGATCAACCCAGTTAAGGAAAAAACAAAGCAAAACAACCCAGATGTGCAAGATCCGAAATTGAAGCAGAGTATCCAGTAT
ATGATAGGAATGTTGAAGAAAAACAAGGTTGCAACGTATGGAAAGAAGAGCGAGTACCTTGAAAGGTAGAACAACAGAGAGAAGGTTAAGGTGGCCTTGA
TCTGAT