« Back to Gossypium raimondii search


Detailed information on CNT30609975


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546743Gossypium raimondiiIpomoea triloba20.0515.3294.7476forward
CNT30616216Gossypium raimondiiSesamum indicum20.324.8689.6177forward
CNT30401878Gossypium raimondiiBeta vulgaris20.8412.3892.4179forward
CNT30525538Gossypium raimondiiPhaseolus vulgaris20.0516.5992.1176forward
CNT30485642Gossypium raimondiiOlea europaea20.3212.1892.2177forward
CNT3043428Gossypium raimondiiPrunus dulcis21.6418.391.4682forward
CNT30542021Gossypium raimondiiBrassica napus20.3214.3792.2177forward
CNT3083138Gossypium raimondiiBrassica juncea20.3213.892.2177forward
CNT30259134Gossypium raimondiiBrassica rapa20.329.2192.2177forward
CNT30154619Gossypium raimondiiPrunus persica21.6420.291.4682forward
CNT3026341Gossypium raimondiiPopulus trichocarpa20.844.0293.6779forward
CNT30112128Gossypium raimondiiFicus carica20.3214.0892.2177forward
CNT30723951Gossypium raimondiiLupinus angustifolius20.3212.2693.5177forward
CNT30115398Gossypium raimondiiEutrema salsugineum20.3215.7193.5177forward

Expression of CNT30609975

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GLLALGFYASIYKPKRQLFLHFAADPIGHQQTKG*

>peptide 2 (33 aa)
MDSHLMGFGRVEHFGFWIALSILYLKFFEFRII*

Sequence

>CNT30609975
GGCCTTTTGGCTTTAGGGTTTTACGCTTCTATATATAAACCTAAACGCCAACTTTTCCTTCATTTCGCCGCAGACCCCATTGGACATCAACAAACCAAAG
GTTAACCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGAAGGTTGAAGAGGAAGAGGAGAAAGATGAGGCAAAGATCTAAGTGATACAGTCTTTGTTGT
TCTTCATGGATAGTCATTTGATGGGTTTTGGTCGGGTCGAACATTTCGGGTTTTGGATCGCTTTATCCATATTGTATCTTAAGTTTTTTGAGTTTAGGAT
TATTTAAGTTAGGTGATTAGGGTTTTTAGGATGTGTCATTGCAAGATCGTTTCTGATTCTTTGTTGTTTTAGGTTCGGG