Detailed information on CNT30246978


BLAST search results

BLAST vs Swiss-Prot:
sp|P29114|LOX1_HORVU, E-value = 4e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020541Avena sativaCitrullus lanatus19.234.9684.8886forward
CNT30592110Avena sativaMusa acuminata24.1111.9786.11108forward
CNT308024Avena sativaZea mays11.8321.8188.6853forward
CNT30683236Avena sativaTriticum urartu19.4221.3894.2587forward
CNT30344056Avena sativaEragrostis tef46.8822.687.62210forward
CNT30361620Avena sativaSorghum bicolor47.5442.7788.26213forward
CNT30100848Avena sativaOryza rufipogon17.4120.6389.7478forward

Expression of CNT30246978

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MMVWIWLVMVWMNALSGSRSSSAYSWVPGSGMRRRLTVGLLGRYPAYGYWPKLTA

>peptide 2 (63 aa)
WQRVEITDTGTHCHTTTPVSRHILSYVLNQSVQSLFILPGAGFFAAAAGCMLRWRCCWGCPWR*

Sequence

>CNT30246978
TGGCAAAGGGTGGAGATTACTGACACGGGCACACATTGTCACACCACAACACCAGTCTCTCGGCACATTCTCTCGTACGTGCTGAACCAGTCGGTACAAT
CTTTATTCATACTACCTGGCGCTGGCTTCTTTGCAGCGGCGGCCGGATGCATGCTCAGATGGAGATGCTGTTGGGGATGCCCTTGGCGGTGAGGCCGGCG
GCGTCGCCCTTGCGGTCAGAGGTGTTGGGGTAGAGCTCGTCGGAGGAGTGCTTGGAGAGCACCTCGAGCAGCGATATCCCGATGATGGTCTGGATCTGGC
TGGTGATGGTGTGGATGAACGCCCTTTCCGGGTCGCGCTCCAGCTCCGCGTACTCCTGGGTGCCTGGCTCCGGCATGCGGCGCCGGCTCACCGTCGGCCT
GTTGGGGAGGTACCCGGCGTACGGGTACTGGCCGAAGTTGACGGCGGC