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Detailed information on CNT30727592


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004692, E-value = 3e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698284Corchorus capsularisQuercus lobata10.4448.2594.2138forward
CNT30450104Corchorus capsularisSaccharum spontaneum6.9622.0691.392forward
CNT30608684Corchorus capsularisGossypium raimondii31.6999.5293.56419forward
CNT30483063Corchorus capsularisChara braunii8.6250.4484.21114forward

Expression of CNT30727592

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSRSINDSAVVFVVSNFQRAISMVIPRSRSALSLSRTQAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 2 (30 aa)
MMRTAQSACEVPVIMFLIKSRCPGASMTVQ*

Sequence

>CNT30727592
CACCAAGGGTAAAAGCAAGCAAAGCATGCTCACGGGTCTGACCATCCTTAGAGATACCGGCTTCAAAACCACCAGTGGTTGAGTCAATGATGAGAACAGC
ACAGTCAGCCTGTGAGGTACCAGTAATCATGTTCTTGATAAAGTCACGATGTCCAGGAGCATCAATGACAGTGCAGTAGTATTTGTTGTCTCGAACTTCC
AGAGGGCAATATCAATGGTGATACCACGTTCACGCTCAGCCTTAAGCTTGTCAAGAACCCAGGCATACTTAAAGGACCTCTTGTTCATCTCAGCAGCCTC
CTTCTCGAACCTTTCAATCACACGCTTGTCAATACCACCAAGCTTGTAGATCAAGTGACCAGTGGTGGTTGACTTTCCAGAGTCGACATGGCCAATGACC
ACAATGTTGATGTGAACCTTCTCCTTACCCATTATAAAACTCGGTAGAGAAGCTGAAACCCAACAAAAAATACATCATCATAAAACAGATTACATACAGA
TAATCGAAATCTAGACTCAGAAACACATAGTATTACCCTTTGCCTAACAGTGATAACAGATCCACATCAATAACATACAATTAGCTATCTAATTTGAAAA
AAAAAGTTTCAGAGAGAATAATTGAACGTACATAAAATCCACAAAAAAAGGTAACCCAGAATTAAAATCCAAAAGATTCAACTAAAACAGAGTGTGGCTG
CTGGGATTCGAGCCCAGGCCCTCCAAATAGATGGAGTTCTCCACTAAACTACAGCCACTAGATCTCAAAAAATCGTTTCCCGTTCAAAACAAATAAGCCT
AAGAAGTAATGATCGTTGACCATTTTGTTTATTTTTGTTAACAAAAATCTCTTAGGCTGTATTTACTTTGATAGATCGGTAATCAGAGGTATTGTTTTCT
CAGAAAACAAAGATTAGAATTGTAAATCACAAAATCTTAAACAAACAGCGACAGATGCTTGAAATCTAATAAGCAATCGATTTAAAAACAAAAGAATCAG
ATCCTAAGCTACAAATATAAAGAATATGAATCAAGCAAAGCAAATCAGATCAGAATAATCTCAAATCAAACAGAGGAATACAAAAATTAACTTTTCGTAT
ACCTATAACAAAATCATACAAGAGATAGAGCTAATAGTTCATCTAACGAACACTCAAATCAGGTTTTGCTTCAAATCAAAGCAAAAGAAAAAAGAATAAA
ATAAAAACATTGATTGAGAAAAGGAATTATACCTGTAAGCTAACAAAAAGACTTTGAGATTCGCTTGACCTGAAGCTCTCGTCGTAGCAGCTGAAGAGAG
CGTAGATAGCAAAAGAAAGAGG