Detailed information on CNT3072006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405616Quercus suberBeta vulgaris39.3317.6284.76105reverse complement
CNT3091118Quercus suberSolanum tuberosum43.4521.1384.48116reverse complement
CNT30508927Quercus suberSolanum lycopersicum29.219.5787.1878reverse complement
CNT30310574Quercus suberCamelina sativa20.978.9389.2956reverse complement
CNT3036650Quercus suberCucumis melo22.479.0291.6760reverse complement

Expression of CNT3072006

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRLKRPRSNSKKLELRSLLCNLNLILILGFLMVNLCFWV*

>peptide 2 (34 aa)
SLALKEAKELIEGLPKKFKERVSKDEAKEAKKQL*

Sequence

>CNT3072006
AAGCTTGGCTTTGAAGGAGGCTAAGGAGTTGATTGAAGGGTTGCCTAAGAAGTTTAAGGAAAGGGTTTCTAAAGATGAGGCTAAAGAGGCCAAGAAGCAA
CTCTAAGAAGCTGGAGCTAAGATCGCTATTGTGTAATTTGAATTTGATTTTGATTTTGGGGTTTCTAATGGTTAATTTGTGTTTTTGGGTTTAGTTTGTA
GTTAGGTTTTGGTGGTACAGTGAAATGTGATTGATGTTCATGAATGAATTTCGCAAATTTAGTGGTT