CANTATAdb - search

Detailed information on CNT30405616

BLAST search results

BLAST vs Swiss-Prot:
sp|Q1ACG9|RK12_CHAVU, E-value = 3e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30267674	Beta vulgaris	Chenopodium quinoa	31.04	56.57	82.16	185	forward
CNT3072006	Beta vulgaris	Quercus suber	17.62	39.33	84.76	105	reverse complement

Expression of CNT30405616

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGRKRVVRVEERERRLRVESVAVAIFSLLFRTEERK*

>peptide 2 (80 aa)
METLAPASSSCFLASSASSLETPSFNFLGKPSINSLASLSNSSIARNFIDGDIKLSLFLDNRCSIGTRSTRSSDNSSRSE*

>peptide 3 (57 aa)
METSNSVFSSTTGAASAPGAPGAATTAAGANDAAETPNLSWSQSTRTLASSKVRPDS*

Sequence

>CNT30405616
CTACATCTAAACCAATATCTCTATTAAAGTAGCTAAATTCGAAGAAAAGATTTACCCCAACATTTACCAAGATTAGAAAAGTAAAATTAAACGATGGAGA
CCTTAGCACCAGCCTCTTCAAGCTGCTTCTTAGCATCTTCAGCATCATCTTTAGAAACCCCTTCCTTCAATTTCTTAGGCAAACCCTCAATCAATTCTTT
AGCCTCTTTAAGCAATTCTAGCATTGCTAGGAACTTCATCGATGGAGACATCAAACTCAGTCTTTTCCTCGACAACAGGTGCAGCATCGGCACCAGGAGC
ACCAGGAGCAGCGACAACAGCAGCAGGAGCGAATGATGCGGCTGAGACACCCAACTTGTCCTGGAGCCAGTCGACGAGAACCCTGGCTTCTTCCAAAGTG
AGGCCGGACAGCTGAGTGCCCAGTTGTTCGATTTTCTCAGGGGCCTCAACGGCAGAAATGGGGCGCAAACGGGTGGTGCGAGTTGAGGAGAGAGAAAGAA
GGTTGAGGGTTGAGAGTGTTGCTGTTGCCATTTTTTCTCTCTTGTTTAGGACTGAAGAGAGGAAATGAGAGGATAGATTGTAGGATAAGAGAGTGA