Detailed information on CNT30508927


BLAST search results

BLAST vs Swiss-Prot:
sp|P24929|RK12_TOBAC, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072006Solanum lycopersicumQuercus suber9.5729.2187.1878reverse complement
CNT30405621Solanum lycopersicumBeta vulgaris27.9844.7982.02228forward
CNT3091771Solanum lycopersicumSolanum tuberosum58.2858.0795.58475forward
CNT30207310Solanum lycopersicumHelianthus annuus18.2830.182.55149forward
CNT3036650Solanum lycopersicumCucumis melo20.1224.6681.71164forward

Expression of CNT30508927

Peptides detected in this lncRNA

>peptide 1 (29 aa)
FSLILGNTLLKFLRQSFNQFLSLFQCQTC*

>peptide 2 (80 aa)
MRLKLQAYPEGTRRVSGHQRGLSWRFHLRAGLPSPVLRRRREGGRELPGGGTVWECEWEVLGFWWGRKLKRAWSLRLLEK*

>peptide 3 (52 aa)
MVAILALLGTSSMTTSNSVFSSTTAGASAAAPPGEATTAAGAKDAAETPSLS*

>peptide 4 (45 aa)
MRLKHQAYPEGTQPVSGRQLGLKWRFHPRAGLPSPPLSMPNLLKP*

>peptide 5 (43 aa)
MGSSRVLVGKEIEACVELAVAGEIGEGERRVIVDNVEAIVAELK

>peptide 6 (87 aa)
SASSLETPSLNFLGNPSINSLASFNAKLVKALTALMVAILALLGTSSMTTSNSVFSSTTAGASAAAPPGAATTAAGAKDAAETPSLS*

Sequence

>CNT30508927
CTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAAC
AGCCTTAATGGTAGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACGTCAAATTCCGTCTTCTCTTCAACCACAGCTGGAGCATCTGCGGCTGCG
CCACCAGGGGCAGCGACAACGGCAGCAGGAGCGAAGGATGCGGCTGAAACACCAAGCTTATCCTGAAGGTACTCAACCAGTTTCTGGGCGTCAGCTAGGG
TTAAAGTGGAGATTTCATCCCCGAGCTGGACTACCTTCTCCGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGC
ATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCA
GCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGA
GCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGT
TTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATT
GTAGCTGAGCTAAAG