Detailed information on CNT30310574


BLAST search results

BLAST vs Swiss-Prot:
sp|P36210|RK121_ARATH, E-value = 3e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072006Camelina sativaQuercus suber8.9320.9789.2956reverse complement
CNT30233940Camelina sativaBrassica oleracea23.9232.1989.33150forward
CNT30724786Camelina sativaLupinus angustifolius25.216.3179.75158forward

Expression of CNT30310574

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKNGLSLRLRESSTPLFHSFGFFGFEFRSLCEW

>peptide 2 (30 aa)
MRFRIRFSRFSPELRRRRWDGASTAAMGRR*

>peptide 3 (85 aa)
SLVAPSLNFLGNPSISSLASFNAKLVKALTALITAIRELLGTSLIITSNSVCSSTTAAAPPSAGAATAAAAGAKESGETPNLSWR*

>peptide 4 (48 aa)
MRASSRVKDEISDPIFSIFSGASTAAMGRSFDGGDGTEVSCTVSEHGR*

>peptide 5 (73 aa)
IFSRSFFKLLGQPFDKLLSFLQRQASQSPHSFNHCDTRATRNLVDNHIELGLLLHNSRCTTVCRSCNSRCSRS*

Sequence

>CNT30310574
ATCTTTAGTCGCTCCTTCTTTAAACTTCTTGGGCAACCCTTCGATAAGCTCCTTAGCTTCCTTCAACGCCAAGCTAGTCAAAGCCCTCACAGCTTTAATC
ACTGCGATACGCGAGCTACTCGGAACCTCGTTGATAATCACATCGAACTCGGTTTGCTCCTCCACAACAGCCGCTGCACCACCGTCTGCCGGAGCTGCAA
CAGCCGCTGCAGCAGGAGCTAAGGAGAGTGGAGAGACGCCGAACTTGTCTTGGAGATAGTCGACGAGGATGCGAGCTTCTTCGAGGGTAATCGACGAGAA
TGCGAGCTTCTTCGAGGGTTAAGGATGAGATTTCGGATCCGATTTTCTCGATTTTCTCCGGAGCTTCGACGGCGGCGATGGGACGGAGCTTCGACGGCGG
CGATGGGACGGAGGTGAGTTGCACGGTGAGTGAGCATGGAAGATGAAGCACCACCGAAGCGGGAGGGGAATTCGAATGCGGTGGTTCGGGAAGGGAAGTG
ATTAGCGGAAGCGAGTGTTGGGTAAGATGAAGAACGGATTGAGCTTGCGATTGAGAGAGTCGTCGACGCCATTGTTTCACTCTTTTGGCTTCTTCGGATT
TGAGTTTCGCTCTCTGTGTGAGTGGTT