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Detailed information on CNT3091118


BLAST search results

BLAST vs Swiss-Prot:
sp|P24929|RK12_TOBAC, E-value = 3e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072006Solanum tuberosumQuercus suber21.1343.4584.48116reverse complement
CNT30207310Solanum tuberosumHelianthus annuus46.8151.9279.77257forward
CNT3036650Solanum tuberosumCucumis melo36.4330.0883.5200forward

Expression of CNT3091118

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTTSNSVFSSTTAGASAAAPPGAATTAAGAKDAAETPSLS*

>peptide 2 (64 aa)
MRPKHQAYPEGTLRVSGHRRGLSWRFHLRAGLPSPVLRRRREGGRKWLGGGGVWECEWGVLGFW*

Sequence

>CNT3091118
CCCAGATAATCAAAACCAAATAAGAATGAACATTTACCGTAAACTCATTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCTAGCTGTTTCTTAGCATCT
TCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCTTCTTTCAAAGCCAAACTTGTTAAAGCCCTAACAG
CCTTAATAGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACGTCAAATTCCGTCTTCTCTTCAACCACAGCTGGAGCATCTGCGGCTGCGCC
ACCAGGAGCGGCGACGACCGCAGCAGGAGCGAAGGATGCGGCCGAAACACCAAGCTTATCCTGAAGGTACTCTACGAGTTTCTGGGCATCGGCGAGGGTT
AAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAAAGTGGCTCGGCGGTGGTGGAGTTTGGGAG
TGCGAATGGGGAGTTCTAGGGTTTTGGTAGGGAATGAAATTGAAGCGTG