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Detailed information on CNT30117116


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695200Oryza nivaraOryza sativa76.23102.8193.43731forward
CNT3067805Oryza nivaraLeersia perrieri19.2949.4785.95185forward
CNT30596609Oryza nivaraOryza meridionalis82.4881.5593.17791forward

Expression of CNT30117116

Peptides detected in this lncRNA

>peptide 1 (62 aa)
PEIVTHRDTFSFYSWYICTHIHNTCIYMLYYKKHACSDATSLRKYIDSHMDTYTSEQHTTNT*

>peptide 2 (41 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTLDSTQAV

>peptide 3 (33 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLLTVHKL

Sequence

>CNT30117116
GCCCAGAAATAGTGACACACAGGGATACATTCTCTTTTTATTCATGGTATATATGTACGCACATACATAACACATGCATATATATGCTTTATTATAAGAA
GCACGCCTGCTCAGATGCAACATCATTAAGAAAATACATAGATAGCCACATGGACACATACACCAGTGAACAACACACGACAAACACATAGATAGTCACT
AGAGCAATAGTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCCCGGGCACAATTACAGCTATTGCTGGTGAAAGAG
GTGGTGGCTTTGGCAGAGATCGCTCTGGCTGAGGCTTGGGTTCTAGCTTAGGATCAGGCTGTGGCTCTGGCTTAGGATTAGGATTTGGCTTGGGGTTAGG
ACTTGGCTCAGGTTTGGGTTCAGGCTTTGGCTCTGGCTTAGGATTTGGGCTTGGCTCCGGTTGTGGCTTAGGCTTTGGATTTGGTTTTGGGTCAGCTTTG
GGGCTAGGTTGCGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTCGGGTCAGGCTGTGGTGTAGGTTTCGGGTCAGGCTGCGGAG
ATGGTTTTGGATCCGGTTGTAGGTTTGGTTGAGGATCTTGTTTTGGTTCAGGCTGTGGTGTAGGTTTTGGGTCAGGCTGCGGTGATGGTTTTGGATCTGG
CTGTGGGTTTGGTTGAGGGTTAGGCTGTGGACTGGGTTTTGTCTCTGGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCTTGGGATCTGCTGGCTTTGGA
TCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTGAGAGGATTGATC
TCCTCATCTCGTTGTCACTACAAACTCTACTACTCACTCTTGACAGTACACAAGCTGTG